Skip to content

Conversation

@jan-janssen
Copy link
Member

@jan-janssen jan-janssen commented Jun 14, 2025

Summary by CodeRabbit

  • Documentation
    • Updated the HPC job execution tutorial notebook with improved formatting and metadata.
    • Added a new section demonstrating the use of the native flux framework's integration with executorlib.
    • Updated Python kernel version to 3.12.11.
    • Minor changes to cache file names shown in outputs.

@review-notebook-app
Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

@coderabbitai
Copy link
Contributor

coderabbitai bot commented Jun 14, 2025

Walkthrough

The Jupyter notebook 3-hpc-job.ipynb was fully replaced with a new version that maintains the same instructional content and code examples but uses a more compact JSON format. The update also introduces a section on the native flux framework, updates the Python kernel version, and results in minor output differences.

Changes

File(s) Change Summary
notebooks/3-hpc-job.ipynb Replaced entire notebook with a compact JSON format; preserved instructional content and code; added section on native flux; updated kernel version; minor output and cache file name changes.

Possibly related PRs

  • Fixes for documentation #560: Minor textual clarifications in the HPC job notebook and documentation; related as both PRs modify the same notebook but differ in scope.
  • execute notebooks on mybinder #610: Updates kernel specification and metadata in 3-hpc-job.ipynb to use the Flux environment; both PRs involve metadata and environment updates for the notebook.
  • Update Documentation #558: Updates documentation and restructures HPC executor terminology and notebook filenames, directly relating to the notebook replacement in this PR.

Poem

In a warren of code, a notebook anew,
Compact and tidy, its format we strew.
With flux and with SLURM, the examples remain,
While kernels hop forward, outputs sustain.
A rabbit’s delight in this digital den—
The lessons endure, again and again!
🐇📓


Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Explain this complex logic.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai explain this code block.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and explain its main purpose.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Support

Need help? Create a ticket on our support page for assistance with any issues or questions.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai generate docstrings to generate docstrings for this PR.
  • @coderabbitai generate sequence diagram to generate a sequence diagram of the changes in this PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@jan-janssen jan-janssen linked an issue Jun 14, 2025 that may be closed by this pull request
Copy link
Contributor

@coderabbitai coderabbitai bot left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Actionable comments posted: 0

🔭 Outside diff range comments (1)
notebooks/3-hpc-job.ipynb (1)

20-25: ⚠️ Potential issue

Inconsistent import and executor usage
You import SlurmJobExecutor but then call SlurmAllocationExecutor(). This will raise a NameError. Either change the import to from executorlib import SlurmAllocationExecutor or update the code to use SlurmJobExecutor.

🧹 Nitpick comments (2)
notebooks/3-hpc-job.ipynb (2)

92-96: Prefer direct import of FluxExecutor
Instead of import flux.job and flux.job.FluxExecutor, consider:

from flux.job import FluxExecutor

for clarity and consistency with other imports.


106-107: Remove empty code cell
The final code cell is empty and can be removed to keep the notebook clean.

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 40296a1 and 425cbd8.

📒 Files selected for processing (1)
  • notebooks/3-hpc-job.ipynb (1 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (15)
  • GitHub Check: unittest_mpich (ubuntu-latest, 3.11)
  • GitHub Check: unittest_mpich (ubuntu-latest, 3.13)
  • GitHub Check: unittest_mpich (ubuntu-latest, 3.12)
  • GitHub Check: notebooks_integration
  • GitHub Check: unittest_flux_mpich
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
  • GitHub Check: unittest_flux_openmpi
  • GitHub Check: unittest_old
  • GitHub Check: unittest_openmpi (ubuntu-latest, 3.12)
  • GitHub Check: unittest_openmpi (ubuntu-latest, 3.13)
  • GitHub Check: unittest_openmpi (ubuntu-latest, 3.11)
  • GitHub Check: minimal
  • GitHub Check: unittest_win
  • GitHub Check: pip_check
🔇 Additional comments (1)
notebooks/3-hpc-job.ipynb (1)

1-3: Kernel spec update looks good
The bump from Python 3.12.9 to 3.12.11 is appropriate and matches the new runtime.

@codecov
Copy link

codecov bot commented Jun 14, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.78%. Comparing base (40296a1) to head (425cbd8).
Report is 2 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #686   +/-   ##
=======================================
  Coverage   96.78%   96.78%           
=======================================
  Files          29       29           
  Lines        1306     1306           
=======================================
  Hits         1264     1264           
  Misses         42       42           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@jan-janssen jan-janssen merged commit fa99ea7 into main Jun 14, 2025
30 checks passed
@jan-janssen jan-janssen deleted the doc_flux_executor branch June 14, 2025 22:55
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

[Documentation] Show how to use the FluxExecutor

2 participants