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Replacing PyMC3 plots w/ Arviz plots & sigma Param change [Part 9] #21

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merged 3 commits into from
Mar 14, 2021
Merged

Replacing PyMC3 plots w/ Arviz plots & sigma Param change [Part 9] #21

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9138623
:art: Update plots from pymc to arviz dependencies & replace param sd…
CloudChaoszero Jan 19, 2021
b4662b7
:rewind: Revert metadata changes in notebooks
CloudChaoszero Feb 14, 2021
fbd200a
:art: Update Arviz viz dependency & workaround kdeplot function error
CloudChaoszero Mar 14, 2021
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5 changes: 3 additions & 2 deletions examples/variational_inference/bayesian_neural_network_advi.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -78,6 +78,7 @@
"source": [
"from warnings import filterwarnings\n",
"\n",
"import arviz as az\n",
"import matplotlib.pyplot as plt\n",
"import numpy as np\n",
"import pymc3 as pm\n",
Expand Down Expand Up @@ -787,7 +788,7 @@
}
],
"source": [
"pm.traceplot(trace);"
"az.plot_trace(trace);"
]
},
{
Expand Down Expand Up @@ -861,7 +862,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.7"
"version": "3.8.5"
},
"latex_envs": {
"bibliofile": "biblio.bib",
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163 changes: 84 additions & 79 deletions examples/variational_inference/empirical-approx-overview.ipynb
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13 changes: 7 additions & 6 deletions examples/variational_inference/variational_api_quickstart.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@
"outputs": [],
"source": [
"%matplotlib inline\n",
"import arviz as az\n",
"import matplotlib.pyplot as plt\n",
"import numpy as np\n",
"import pymc3 as pm\n",
Expand Down Expand Up @@ -164,7 +165,7 @@
}
],
"source": [
"pm.traceplot(trace);"
"az.plot_trace(trace);"
]
},
{
Expand Down Expand Up @@ -272,7 +273,7 @@
}
],
"source": [
"pm.plot_posterior(mean_field.sample(1000), color=\"LightSeaGreen\");"
"az.plot_posterior(mean_field.sample(1000), color=\"LightSeaGreen\");"
]
},
{
Expand Down Expand Up @@ -1307,7 +1308,7 @@
}
],
"source": [
"pm.plot_posterior(trace_approx.sample(10000));"
"az.plot_posterior(trace_approx.sample(10000));"
]
},
{
Expand Down Expand Up @@ -2108,9 +2109,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"display_name": "Python (PyMC3 Dev)",
"language": "python",
"name": "python3"
"name": "pymc3-dev"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -2122,7 +2123,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.7"
"version": "3.8.5"
}
},
"nbformat": 4,
Expand Down