-
-
Notifications
You must be signed in to change notification settings - Fork 2k
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Raise ValueError if random variables are present in the logp graph #5614
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report
@@ Coverage Diff @@
## main #5614 +/- ##
=======================================
Coverage 87.63% 87.64%
=======================================
Files 76 76
Lines 13717 13722 +5
=======================================
+ Hits 12021 12026 +5
Misses 1696 1696
|
ricardoV94
force-pushed
the
logp_rv_check
branch
from
March 18, 2022 14:07
9b7a51d
to
b5a6ca4
Compare
ricardoV94
commented
Mar 18, 2022
Comment on lines
201
to
+210
N = 100 | ||
with pm.Model() as model: | ||
mu = pm.Normal("mu", 0, 1) | ||
normal_dist = pm.Normal.dist(mu, 1, size=N) | ||
|
||
def logp(x): | ||
def logp(x, mu): | ||
normal_dist = pm.Normal.dist(mu, 1, size=N) | ||
out = pm.logp(normal_dist, x) | ||
return out | ||
|
||
obs = pm.DensityDist("density_dist", logp=logp, observed=np.random.randn(N), size=N) | ||
obs = pm.DensityDist("density_dist", mu, logp=logp, observed=np.random.randn(N), size=N) |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
This is a perfect illustration of the problem that's detected by this PR
ricardoV94
force-pushed
the
logp_rv_check
branch
from
March 18, 2022 15:33
b5a6ca4
to
df308fb
Compare
michaelosthege
approved these changes
Mar 20, 2022
Aeppl allows for graphs containing random variables. PyMC models do not generally allow for this, with the current exception of models that include SimulatorRVs.
ricardoV94
force-pushed
the
logp_rv_check
branch
from
March 21, 2022 08:04
df308fb
to
d4880a8
Compare
Failing test seems unrelated |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Aeppl allows for graphs containing random variables. PyMC models do not generally allow for this, with the current exception of models that include SimulatorRVs.
This PR adds a check to avoid subtle bugs when RandomVariables creep in into the logp unexpectedly, which can happen when mis-using DensityDist or Interval transforms.
Closes #5155