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Add log_prob method to Stable (same one that already exists in StableWithLogProb) #1256

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Add log_prob method to Stable (same one that already exists in StableWithLogProb)

Add log_prob method to Stable (same one that already exists in StableWithLogProb) #1256

Workflow file for this run

.github/workflows/ci.yml at 2bbbd58
name: CI
on:
push:
branches: [dev, master]
pull_request:
branches: [dev, master]
env:
CXX: g++-9
CC: gcc-9
# See coveralls-python - Github Actions support:
# https://github.com/TheKevJames/coveralls-python/blob/master/docs/usage/configuration.rst#github-actions-support
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_SERVICE_NAME: github
jobs:
lint:
runs-on: ubuntu-20.04
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
pip install ruff black mypy nbstripout nbformat
- name: Lint
run: |
make lint
docs:
runs-on: ubuntu-20.04
needs: lint
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build graphviz
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install -r docs/requirements.txt
pip freeze
- name: Build docs and run doctest
run: |
make docs
make doctest
tutorials-html:
runs-on: ubuntu-20.04
needs: lint
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build graphviz pandoc
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install -r docs/requirements.txt
# requirements for tutorials (from .[dev])
sudo apt-get install pandoc
pip install nbformat
pip install nbsphinx>=0.3.2
pip install nbstripout
pip install pypandoc
pip install ninja
pip freeze
- name: Build HTML from tutorials
run: |
SPHINXOPTS="-E" make tutorial
unit:
runs-on: ubuntu-20.04
needs: docs
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install --upgrade coveralls
pip freeze
- name: Run unit tests
run: |
pytest -vs --cov=pyro --cov-config .coveragerc --stage unit --durations 20
- name: Submit to coveralls
run: coveralls --service=github || true
env:
COVERALLS_PARALLEL: true
COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
examples:
runs-on: ubuntu-20.04
needs: [docs, tutorials-html]
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Setup Graphviz
uses: ts-graphviz/setup-graphviz@v1
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install --upgrade coveralls
pip freeze
- name: Run examples
run: |
CI=1 pytest -vs --cov=pyro --cov-config .coveragerc --stage test_examples --durations 10
grep -l smoke_test tutorial/source/*.ipynb | xargs grep -L 'smoke_test = False' \
| CI=1 xargs pytest -vx --nbval-lax --current-env
- name: Submit to coveralls
run: coveralls --service=github || true
env:
COVERALLS_PARALLEL: true
COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
integration_1:
runs-on: ubuntu-20.04
needs: docs
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install --upgrade coveralls
pip freeze
- name: Run integration test (batch 1)
run: |
pytest -vs --cov=pyro --cov-config .coveragerc --stage integration_batch_1 --durations 10
- name: Submit to coveralls
run: coveralls --service=github || true
env:
COVERALLS_PARALLEL: true
COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
integration_2:
runs-on: ubuntu-20.04
needs: docs
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install --upgrade coveralls
pip freeze
- name: Run integration test (batch 2)
run: |
pytest -vs --cov=pyro --cov-config .coveragerc --stage integration_batch_2 --durations 10
- name: Submit to coveralls
run: coveralls --service=github || true
env:
COVERALLS_PARALLEL: true
COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
funsor:
runs-on: ubuntu-20.04
needs: docs
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9 ninja-build
python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
# Keep track of pyro-api master branch
pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
pip install .[test]
pip install -e .[funsor]
pip install --upgrade coveralls
pip freeze
- name: Run funsor tests
run: |
pytest -vs --cov=pyro --cov-config .coveragerc --stage funsor --durations 10
CI=1 pytest -vs --cov=pyro --cov-config .coveragerc --stage test_examples --durations 10 -k funsor
- name: Submit to coveralls
run: coveralls --service=github || true
env:
COVERALLS_PARALLEL: true
COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
finish:
needs: [unit, examples, integration_1, integration_2, funsor]
runs-on: ubuntu-20.04
strategy:
matrix:
python-version: [3.8]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Coveralls Finished
run: |
pip install --upgrade coveralls
coveralls --service=github --finish || true