Replace old sparse -> dense -> sparse with new from_sparse method #868
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "Test" | |
| on: | |
| push: | |
| branches: [main,github-actions-test] | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'README.md' | |
| - 'LICENSE.txt' | |
| - '.gitignore' | |
| pull_request: | |
| branches: [main] | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'README.md' | |
| - 'LICENSE.txt' | |
| - '.gitignore' | |
| # Disable debugger's warnings from nbconvert in test_tutorials.py | |
| env: | |
| PYDEVD_DISABLE_FILE_VALIDATION: 1 | |
| jobs: | |
| pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11"] | |
| torch-version: [2.0.1] | |
| include: | |
| - torch-version: 2.0.1 | |
| test-scope: ["codebase", "tutorials-simplicial", "tutorials-hypergraph", "tutorials-cell-combinatorial"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install PyTorch ${{ matrix.torch-version }}+cpu | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install torch==${{ matrix.torch-version}} --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install torch-scatter -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-sparse -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-cluster -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| - name: Install main package | |
| run: | | |
| pip install -e .[all] | |
| - name: Typecheck [mypy] | |
| run: | | |
| mypy -p topomodelx | |
| - name: Run tests for codebase [pytest] | |
| if : ${{matrix.test-scope == 'codebase'}} | |
| run: | | |
| pytest --cov --cov-report=xml:coverage.xml test/nn test/base test/utils | |
| - name: Run tests for tutorials on simplicial domain [pytest] | |
| if : ${{matrix.test-scope == 'tutorials-simplicial'}} | |
| run: | | |
| pytest test/tutorials/test_simplicial.py | |
| - name: Run tests for tutorials on hypergraph domain [pytest] | |
| if : ${{matrix.test-scope == 'tutorials-hypergraph'}} | |
| run: | | |
| pytest test/tutorials/test_hypergraph.py | |
| - name: Run tests for tutorials on cell and combinatorial domains [pytest] | |
| if : ${{matrix.test-scope == 'tutorials-cell-combinatorial'}} | |
| run: | | |
| pytest test/tutorials/test_cell.py test/tutorials/test_combinatorial.py | |
| - name: Upload coverage | |
| if : ${{matrix.test-scope == 'codebase'}} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| fail_ci_if_error: false |