Activate more ruff rules #38

	name: "Testing Codebase"

	on:
	workflow_dispatch:
	push:
	branches: [main,github-actions-test]
	paths-ignore:
	- 'docs/**'
	- 'README.md'
	- 'LICENSE.txt'
	- '.gitignore'

	pull_request:
	branches: [main]
	paths-ignore:
	- 'docs/**'
	- 'README.md'
	- 'LICENSE.txt'
	- '.gitignore'

	jobs:

	pytest:
	runs-on: ${{ matrix.os }}

	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest]
	python-version: ["3.10", "3.11"]
	torch-version: [2.0.1]
	include:
	- torch-version: 2.0.1

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: "pip"
	cache-dependency-path: '**/pyproject.toml'

	- name: Install PyTorch ${{ matrix.torch-version }}+cpu
	run: \|
	pip install --upgrade pip setuptools wheel
	pip install torch==${{ matrix.torch-version}} --extra-index-url https://download.pytorch.org/whl/cpu
	pip install torch-scatter -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html
	pip install torch-sparse -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html
	pip install torch-cluster -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html
	pip show pip
	- name: Install main package
	run: \|
	pip install -e .[all]
	- name: Typecheck [mypy]
	run: \|
	mypy -p topomodelx
	- name: Run tests for codebase [pytest]
	run: \|
	pytest -n 2 --cov --cov-report=xml:coverage.xml test/nn test/base test/utils
	- name: Upload coverage
	uses: codecov/codecov-action@v3
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	file: coverage.xml
	fail_ci_if_error: false

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