Update build.yml, revert back to itk 5.4.0 #140
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Build | |
on: | |
workflow_dispatch: | |
inputs: | |
debug_enabled: | |
type: boolean | |
description: 'Enable tmate debugging' | |
required: false | |
default: false | |
use_cached_itksnap_build: | |
type: boolean | |
description: 'Use cached ITK-SNAP build' | |
required: false | |
default: false | |
skip_testing: | |
type: boolean | |
description: 'Skip testing' | |
required: false | |
default: false | |
upload_release: | |
type: boolean | |
description: 'Upload a named release to SourceForge' | |
required: false | |
default: false | |
push: | |
# release: | |
# types: | |
# - published | |
jobs: | |
build_wheels: | |
name: Build wheels on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-20.04,macos-13,macos-14,windows-2022] | |
itk_ver: [ 'v5.4.0' ] | |
vtk_ver: [ '9.3.1' ] | |
qt_ver: [ '6.6.3' ] | |
include: | |
- os: ubuntu-20.04 | |
qt_host: linux | |
qt_arch: gcc_64 | |
ctest_cmd: xvfb-run -a ctest | |
- os: macos-13 | |
qt_host: mac | |
qt_arch: clang_64 | |
ctest_cmd: ctest | |
- os: macos-14 | |
qt_host: mac | |
qt_arch: clang_64 | |
ctest_cmd: ctest | |
- os: windows-2022 | |
qt_host: windows | |
qt_arch: win64_msvc2019_64 | |
ctest_cmd: ctest | |
steps: | |
# Select MSVC tools on windows | |
- name: Select MSVC 2019/2022 | |
uses: ilammy/msvc-dev-cmd@v1 | |
if: ${{ runner.os == 'Windows' }} | |
# Setup ninja | |
- name: Setup Ninja | |
uses: seanmiddleditch/gha-setup-ninja@master | |
# Install system packages | |
- name: Install System Packages | |
uses: ConorMacBride/install-package@v1 | |
with: | |
# brew: | |
apt: libcurl4-openssl-dev | |
choco: nsis | |
# Install curl on Windows | |
- name: Install libcurl on Windows | |
uses: johnwason/vcpkg-action@v6 | |
id: vcpkg | |
if: ${{ runner.os == 'Windows' }} | |
with: | |
pkgs: curl | |
triplet: x64-windows-release | |
token: ${{ github.token }} | |
github-binarycache: false | |
# Install Qt | |
- name: Install Qt on Ubuntu | |
uses: jurplel/install-qt-action@v4 | |
with: | |
version: ${{ matrix.qt_ver }} | |
target: 'desktop' | |
host: ${{ matrix.qt_host }} | |
arch: ${{ matrix.qt_arch }} | |
cache: true | |
# Use cached VTK build if available | |
- name: Restore VTK Cache | |
id: cache-vtk | |
uses: actions/cache/restore@v4 | |
with: | |
path: ${{github.workspace}}/vtk/install | |
key: ${{ matrix.os }}-vtk-${{ matrix.vtk_ver }} | |
# Check out VTK | |
- name: Checkout VTK | |
if: steps.cache-vtk.outputs.cache-hit != 'true' | |
uses: actions/checkout@v4 | |
with: | |
repository: 'Kitware/VTK.git' | |
ref: v${{ matrix.vtk_ver }} | |
submodules: true | |
path: 'vtk' | |
# Build VTK | |
- name: Build VTK | |
if: steps.cache-vtk.outputs.cache-hit != 'true' | |
uses: threeal/cmake-action@v2.0.0 | |
with: | |
source-dir: ${{github.workspace}}/vtk | |
build-dir: ${{github.workspace}}/vtk/build | |
build-args: "-t install -- -k 0" | |
generator: Ninja | |
options: | | |
BUILD_TESTING:BOOL=FALSE | |
BUILD_EXAMPLES:BOOL=FALSE | |
BUILD_SHARED_LIBS:BOOL=FALSE | |
VTK_REQUIRED_OBJCXX_FLAGS:STRING= | |
VTK_GROUP_ENABLE_Qt:STRING=YES | |
VTK_MODULE_ENABLE_VTK_GUISupportQtQuick:STRING=NO | |
VTK_MODULE_ENABLE_VTK_GUISupportQtSQL:STRING=NO | |
CMAKE_BUILD_TYPE=Release | |
CMAKE_INSTALL_PREFIX=${{github.workspace}}/vtk/install | |
${{ runner.os == 'Windows' && 'VTK_SMP_ENABLE_STDTHREAD=OFF' || '' }} | |
# Cache the VTK build | |
- name: Cache VTK | |
if: steps.cache-vtk.outputs.cache-hit != 'true' | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{github.workspace}}/vtk/install | |
key: ${{ matrix.os }}-vtk-${{ matrix.vtk_ver }} | |
# Use cached ITK build if available. Unfortunately ITK make install fails to | |
# install one file, vnl_vector_ref.hxx so instead of caching the install dir | |
# we are caching the build dir | |
- name: Restore ITK Cache | |
id: cache-itk | |
uses: actions/cache/restore@v4 | |
with: | |
path: ${{github.workspace}}/itk | |
key: ${{ matrix.os }}-itk-${{ matrix.itk_ver }}-build | |
# Check out ITK | |
- name: Checkout ITK | |
if: steps.cache-itk.outputs.cache-hit != 'true' | |
uses: actions/checkout@v4 | |
with: | |
repository: 'InsightSoftwareConsortium/ITK.git' | |
ref: ${{ matrix.itk_ver }} | |
submodules: true | |
path: 'itk' | |
# Build ITK | |
- name: Build ITK | |
if: steps.cache-itk.outputs.cache-hit != 'true' | |
uses: threeal/cmake-action@v2.0.0 | |
with: | |
source-dir: ${{github.workspace}}/itk | |
build-dir: ${{github.workspace}}/itk/build | |
build-args: | | |
-t | |
install | |
generator: Ninja | |
options: | | |
BUILD_TESTING:BOOL=FALSE | |
BUILD_EXAMPLES:BOOL=FALSE | |
Module_MorphologicalContourInterpolation:BOOL=TRUE | |
CMAKE_BUILD_TYPE=Release | |
CMAKE_INSTALL_PREFIX=${{github.workspace}}/itk/install | |
${{ runner.os == 'Windows' && 'CMAKE_EXE_LINKER_FLAGS=/FORCE:MULTIPLE' || '' }} | |
${{ runner.os == 'Windows' && 'CMAKE_EXE_SHARED_FLAGS=/FORCE:MULTIPLE' || '' }} | |
- name: Cache ITK | |
if: steps.cache-itk.outputs.cache-hit != 'true' | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{github.workspace}}/itk | |
key: ${{ matrix.os }}-itk-${{ matrix.itk_ver }}-build | |
# Restore ITK-SNAP cache if requested by the user. This should allow us to create faster builds | |
# because only the updated files should require rebuilding | |
- name: Restore ITK-SNAP Cache (optional) | |
id: cache-restore-itksnap | |
uses: actions/cache/restore@v4 | |
if: ${{ github.event_name == 'workflow_dispatch' && inputs.use_cached_itksnap_build }} | |
with: | |
path: ${{github.workspace}}/itksnap | |
key: ${{ matrix.os }}-itksnap-build-${{ github.ref }} | |
# Checkout ITK-SNAP code | |
- name: Checkout code | |
uses: actions/checkout@v4 | |
with: | |
submodules: true | |
clean: false | |
path: itksnap | |
persist-credentials: false | |
# Post-checkout fetch. This is to prevent errors from the ExperimentalUpdate command due to | |
# some bizarre git error with greedy submodule. | |
- name: Post-checkout fetch | |
working-directory: ${{github.workspace}}/itksnap | |
shell: bash | |
continue-on-error: true | |
run: git fetch | |
# Configure ITK-SNAP | |
- name: Configure ITK-SNAP | |
uses: threeal/cmake-action@v2.0.0 | |
continue-on-error: false | |
with: | |
source-dir: ${{github.workspace}}/itksnap | |
build-dir: ${{github.workspace}}/itksnap/build | |
generator: Ninja | |
run-build: false | |
args: ${{ runner.os == 'Windows' && steps.vcpkg.outputs.vcpkg-cmake-config || '' }} | |
options: | | |
ITK_DIR=${{github.workspace}}/itk/build | |
VTK_DIR=${{github.workspace}}/vtk/install/lib/cmake/vtk-9.3 | |
CMAKE_BUILD_TYPE=Release | |
DO_UPLOAD=ON | |
SITE=github-runner-${{ matrix.os }} | |
${{ runner.os == 'Windows' && format('CURL_LIBRARY={0}/vcpkg/installed/x64-windows-release/lib/libcurl.lib', github.workspace) || '' }} | |
${{ runner.os == 'Windows' && format('CURL_INCLUDE_DIR={0}/vcpkg/installed/x64-windows-release/include', github.workspace) || '' }} | |
${{ runner.os == 'MacOS' && 'CMAKE_OSX_DEPLOYMENT_TARGET=12.6' || '' }} | |
- name: Setup tmate session | |
uses: mxschmitt/action-tmate@v3 | |
if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
# Build ITK-SNAP using CDash | |
- name: ITK-SNAP Dashboard -- Configure and Build | |
id: ctest-config | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
continue-on-error: true | |
run: | | |
${{ matrix.ctest_cmd }} -D ExperimentalStart | |
${{ matrix.ctest_cmd }} -D ExperimentalUpdate | |
${{ matrix.ctest_cmd }} -D ExperimentalConfigure | |
${{ matrix.ctest_cmd }} -D ExperimentalBuild | |
- name: ITK-SNAP Dashboard -- Test | |
id: ctest-test | |
if: ${{ github.event_name != 'workflow_dispatch' || !inputs.skip_testing }} | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
continue-on-error: true | |
run: | | |
${{ matrix.ctest_cmd }} -D ExperimentalTest | |
- name: ITK-SNAP Dashboard -- Submit | |
id: ctest-submit | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
continue-on-error: true | |
run: | | |
${{ matrix.ctest_cmd }} -D ExperimentalSubmit | |
- name: ITK-SNAP Dashboard -- Gatekeeper | |
if: ${{ steps.ctest-config.outcome != 'success' || steps.ctest-submit.outcome != 'success' }} | |
run: exit -1 | |
# Cache the ITK-SNAP build | |
- name: Cache ITK-SNAP build directory | |
if: steps.cache-restore-itksnap.outputs.cache-hit != 'true' | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{github.workspace}}/itksnap | |
key: ${{ matrix.os }}-itksnap-build-${{ github.ref }} | |
# Add libcurl.dll to PATH on windows | |
- name: Append directory with libcurl.dll to PATH | |
if: ${{ runner.os == 'Windows' }} | |
shell: bash | |
run: | | |
echo "${{github.workspace}}/vcpkg/installed/x64-windows-release/bin" >> $GITHUB_PATH | |
# On MacOS, setup keychain for application signing | |
# The notarization keys are from https://appstoreconnect.apple.com/access/integrations/api | |
- name: Setup codesign keychain | |
if: ${{ runner.os == 'MacOS' }} | |
working-directory: ${{github.workspace}}/itksnap/build | |
env: | |
# Private key from the .p12 file (export certificate & key to .p12) | |
CODESIGN_P12_KEY: ${{ secrets.SNAP_MACOSX_CODESIGN_P12_KEY }} | |
# Unique substring of the certificate name (the number part is ok) | |
CODESIGN_CERT: "${{ secrets.SNAP_MACOS_DEV_CERTIFICATE_NAME }}" | |
# Notarization pkey/keyid/issuer triplet (pkey is base64 encoded) | |
NOTARIZE_KEY: ${{ secrets.SNAP_MACOS_NOTARIZE_PRIVATE_KEY }} | |
NOTARIZE_KEY_ID: ${{ secrets.SNAP_MACOS_NOTARIZE_KEY_ID }} | |
NOTARIZE_ISSUER: ${{ secrets.SNAP_MACOS_NOTARIZE_ISSUER_UUID }} | |
run: | | |
security create-keychain -p "" build.keychain | |
security default-keychain -s build.keychain | |
security unlock-keychain -p "" build.keychain | |
security import ../Utilities/MacOS/apple_developer_for_github.p12 -k build.keychain -P "$CODESIGN_P12_KEY" -T /usr/bin/codesign | |
security set-key-partition-list -S apple-tool:,apple: -s -k "" build.keychain | |
echo $NOTARIZE_KEY | base64 -d > notarize_key | |
xcrun notarytool store-credentials -k notarize_key -d $NOTARIZE_KEY_ID -i $NOTARIZE_ISSUER --keychain /Users/runner/Library/Keychains/build.keychain-db itksnap_notarize | |
rm -rf notarize_key | |
cmake -DSNAP_MACOS_NOTARYTOOL_PROFILE=itksnap_notarize -DSNAP_MACOS_KEYCHAIN=/Users/runner/Library/Keychains/build.keychain-db -DSNAP_MACOSX_CODESIGN_CERT=$CODESIGN_CERT . | |
# Package ITK-SNAP | |
- name: Package ITK-SNAP | |
continue-on-error: false | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
run: | | |
cpack --verbose | |
# Extract the filename of ITK-SNAP package | |
- name: Read package name | |
id: package_itksnap | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
run: | | |
echo "package_file=$(jq -r '.filename' package_info.json)" >> $GITHUB_OUTPUT | |
- name: Upload artifact | |
uses: actions/upload-artifact@v4 | |
with: | |
name: ${{steps.package_itksnap.outputs.package_file}} | |
path: ${{github.workspace}}/itksnap/build/${{steps.package_itksnap.outputs.package_file}} | |
- name: Upload to sourceforge | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
env: | |
PRIVATE_KEY: ${{ secrets.SNAP_SOURCEFORGE_PRIVATE_KEY }} | |
PUBLIC_KEY: ${{ secrets.SNAP_SOURCEFORGE_PUBLIC_KEY }} | |
USER: ${{ secrets.SNAP_SOURCEFORGE_PUBLIC_USERNAME }} | |
run: | | |
mkdir -p $HOME/.ssh && chmod 700 $HOME/.ssh | |
echo $PUBLIC_KEY | base64 -d > $HOME/.ssh/sfkey.pub && chmod 600 $HOME/.ssh/sfkey.pub | |
echo $PRIVATE_KEY | base64 -d > $HOME/.ssh/sfkey && chmod 600 $HOME/.ssh/sfkey | |
touch $HOME/.ssh/config && chmod 600 $HOME/.ssh/config | |
echo "StrictHostKeyChecking=no" >> $HOME/.ssh/config | |
echo "BatchMode=yes" >> $HOME/.ssh/config | |
echo "IdentityFile=~/.ssh/sfkey" >> $HOME/.ssh/config | |
cmake -DSCP_ARGUMENTS=-v -DSCP_USERNAME=$USER . | |
cmake --build . --target itksnap_upload_experimental | |
- name: Upload named release to sourceforge | |
if: ${{ github.event_name == 'workflow_dispatch' && inputs.upload_release }} | |
working-directory: ${{github.workspace}}/itksnap/build | |
shell: bash | |
run: | | |
cmake --build . --target itksnap_upload_release | |
- name: Cleanup secrets | |
if: ${{ always() }} | |
shell: bash | |
working-directory: ${{github.workspace}}/itksnap/build | |
run: | | |
rm -rf $HOME/.ssh/sfkey.pub $HOME/.ssh/sfkey | |
${{ runner.os == 'MacOS' && 'security delete-keychain build.keychain' || 'echo na' }} | |