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LANG: python 3.9 update (amplicon) #229

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LANG: python 3.9 update (amplicon) #229

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5d0fd23
PREP: python 3.9 update (amplicon)
lizgehret Apr 23, 2024
57fba27
Merge remote-tracking branch 'upstream/dev' into Language-python39-up…
lizgehret Apr 23, 2024
e689a37
Merge remote-tracking branch 'upstream/dev' into Language-python39-up…
lizgehret Apr 23, 2024
2e2953f
looks like we need python_abi after all
lizgehret Apr 23, 2024
7683490
Update 2024.5/amplicon/passed/seed-environment-conda.yml
lizgehret Apr 30, 2024
3ce1798
pin: keep prior seaborn version
lizgehret Apr 30, 2024
9e4b926
Update conda environments (Language-python39-update/amplicon)
q2d2 May 2, 2024
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36 changes: 19 additions & 17 deletions 2024.5/amplicon/passed/seed-environment-conda.yml
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Expand Up @@ -4,18 +4,19 @@ channels:
- bioconda
- defaults
dependencies:
- biom-format=2.1.14
- h5py=3.8.0
- hdf5=1.14.0
- mafft=7.520
- matplotlib=3.6.0
- biom-format=2.1.15
- h5py=3.11.0
- hdf5=1.14.3
- mafft=7.525
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- matplotlib=3.8.4
- notebook=6.5.5
- numpy=1.24.4
- pandas=1.5.3
- parsl=2023.12.04
- patsy=0.5.3
- pillow=9.4.0
- python=3.8
- numpy=1.26.4
- pandas=2.2.2
- parsl=2024.4.15
- patsy=0.5.6
- pillow=10.3.0
- python=3.9.19
- python_abi=3.9
- q2-alignment=2024.5.0.dev0+1.g3a9c58b
- q2-composition=2024.5.0.dev0
- q2-cutadapt=2024.5.0.dev0
Expand All @@ -42,13 +43,14 @@ dependencies:
- q2galaxy=2024.5.0.dev0+2.ga124fa1
- q2templates=2024.5.0.dev0
- qiime2=2024.5.0.dev0+2.g27f5ec0
- r-base=4.2.2
- r-base=4.3.3
- r-reticulate=1.36.0
- rescript=2024.5.0.dev0+3.g6e87cfe
- scikit-bio=0.5.8
- scikit-learn=0.24.1
- scipy=1.10.0
- seaborn=0.12.2
- unifrac-binaries=1.3.2
- scikit-bio=0.6.0
- scikit-learn=1.4.2
- scipy=1.13.0
- seaborn=0.13.2
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- unifrac-binaries=1.4
- unifrac=1.3
extras:
variant_override:
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