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IMP: install instructions use direct URL for env file #586

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Jun 26, 2024
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IMP: install instructions use direct URL for env file #586

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60 changes: 12 additions & 48 deletions source/install/native.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -70,32 +70,20 @@ QIIME 2 Amplicon Distribution
</p>
</div>
<div id="amplicon-macOS-intel" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
<pre>conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-macos-latest-conda.yml</pre>
</div>
<div id="amplicon-macOS-apple-silicon" class="tab-pane fade">
<p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml
<pre>CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-macos-latest-conda.yml
conda activate qiime2-amplicon-2024.5
conda config --env --set subdir osx-64</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="amplicon-linux" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
<pre>conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-ubuntu-latest-conda.yml</pre>
</div>
<div id="amplicon-wsl" class="tab-pane fade">
<p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
<pre>conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-ubuntu-latest-conda.yml</pre>
</div>
</div>
</div>
Expand All @@ -120,32 +108,20 @@ QIIME 2 Metagenome Distribution
</p>
</div>
<div id="metagenome-macOS-intel" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
<pre>conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-macos-latest-conda.yml</pre>
</div>
<div id="metagenome-macOS-apple-silicon" class="tab-pane fade">
<p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml
<pre>CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-macos-latest-conda.yml
conda activate qiime2-metagenome-2024.5
conda config --env --set subdir osx-64</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="metagenome-linux" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
<pre>conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-ubuntu-latest-conda.yml</pre>
</div>
<div id="metagenome-wsl" class="tab-pane fade">
<p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
<pre>conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-ubuntu-latest-conda.yml</pre>
</div>
</div>
</div>
Expand All @@ -170,32 +146,20 @@ QIIME 2 Tiny Distribution
</p>
</div>
<div id="tiny-macOS-intel" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
<pre>conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-macos-latest-conda.yml</pre>
</div>
<div id="tiny-macOS-apple-silicon" class="tab-pane fade">
<p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml
<pre>CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-macos-latest-conda.yml
conda activate qiime2-tiny-2024.5
conda config --env --set subdir osx-64</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="tiny-linux" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
<pre>conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-ubuntu-latest-conda.yml</pre>
</div>
<div id="tiny-wsl" class="tab-pane fade">
<p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
<pre>conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-ubuntu-latest-conda.yml</pre>
</div>
</div>
</div>
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