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"Readme": "# q2-amrfinderplus\n\n[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)\n\nQIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.\n\n## Installation\nTo install _q2-amrfinderplus_, follow the steps described in the [QIIME 2 installation instructions](https://docs.qiime2.org/2024.10/install/native/#qiime-2-pathogenome-distribution) for the pathogenome distribution .\n\n\n## Functionality\nThis QIIME 2 plugin contains actions used to annotate protein sequences MAGs and contigs with antimicrobial resistance genes. The underlying tool used is [AMRFinderPlus](https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/), for details on\nthe package, please refer to the [AMRFinderPlus documentation](https://github.com/ncbi/amr/wiki)). Checkout the [wiki](https://github.com/bokulich-lab/q2-amrfinderplus/wiki) for usage examples of _q2-amrfinderplus_.\n\n| Action | Description |\n|------------------------|--------------------------------------------------------------------------------------------|\n| fetch-amrfinderplus-db | Download AMRFinderPlus database. |\n| annotate | Annotate protein sequences, MAGs or contigs with antimicrobial resistance gene information.|\n\n## Dev environment\nThis repository follows the _black_ code style. To make the development slightly easier\nthere are a couple of pre-commit hooks included here that will ensure that your changes\nfollow that formatting style. Before you start working on the code, please\ninstall the hooks by executing `make dev` in your conda environment. From then on,\nthey will be run automatically every time you commit any changes.\n",
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"Plugin Name": "q2-amrfinderplus",
"Branch": "main",
"User Docs": "https://github.com/bokulich-lab/q2-amrfinderplus/wiki",
"Build Status": "failed",
"Commit Date": "2024-12-11T08:18:52Z",
"Stars": 0,
"Description": "q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.",
"Releases": ["pathogenome-2024.10"]
}
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