FIX: correctly generate the MANIFEST when collating SampleData[MAGs]

[misialq]

This PR fixes a bug where the MANIFEST file in the SampleData[MAGs] artifact generated by the collate-sample-data-mags action would contain only entires from the last artifact which was being collated (the manifests were being overwritten). Instead, the entries will now be appended to the MANIFEST found in the first artifact.

Copilot reviewed 2 out of 5 changed files in this pull request and generated no comments.

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• q2_types/per_sample_sequences/tests/data/collated_mags/MANIFEST: Language not supported
• q2_types/per_sample_sequences/tests/data/partitioned_mags/mag1/MANIFEST: Language not supported
• q2_types/per_sample_sequences/tests/data/partitioned_mags/mag2/MANIFEST: Language not supported

Comments suppressed due to low confidence (1)

q2_types/per_sample_sequences/_methods.py:86

• The comment has a grammatical error. It should be "it's" instead of "its".

# Since its present many times it will be overwritten, but that ok

[misialq]

Hey @lizgehret, quick question about flake8: it complains about syntax but that's only because it's using python3.8 as a reference - this should be fine with 3.10. Should Python version also get bumped in the lint CI?

[lizgehret]

Hey @lizgehret, quick question about flake8: it complains about syntax but that's only because it's using python3.8 as a reference - this should be fine with 3.10. Should Python version also get bumped in the lint CI?

Oh yeah you're totally right @misialq - I'll get that updated! Thanks for catching 🙂

[lizgehret]

Okay @misialq lint has been fixed!

[misialq]

Awesome, thanks @lizgehret! This is now ready for review by someone on your side of the pond 😁

[lizgehret]

this looks reasonable to me, thanks @misialq!