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Just got this, was very surprised. Why does the source path need to be a writable filesystem?
(qiita)18:19:36 (qiita@qiita):scripts$ ./qiita db load_raw --fp /sequencing/ucsd/complete_runs/150420_M00436_0038_000000000-ABMKV/Data/Intensities/BaseCalls/Pool_S1_L001_I1_001.fastq.gz --fp_type raw_barcodes --filetype FASTQ --study 10129
Traceback (most recent call last):
File "./qiita", line 415, in <module>
qiita()
File "/home/qiita/.virtualenvs/qiita/lib/python2.7/site-packages/click/core.py", line 610, in __call__
return self.main(*args, **kwargs)
File "/home/qiita/.virtualenvs/qiita/lib/python2.7/site-packages/click/core.py", line 590, in main
rv = self.invoke(ctx)
File "/home/qiita/.virtualenvs/qiita/lib/python2.7/site-packages/click/core.py", line 936, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/qiita/.virtualenvs/qiita/lib/python2.7/site-packages/click/core.py", line 936, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/qiita/.virtualenvs/qiita/lib/python2.7/site-packages/click/core.py", line 782, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/qiita/.virtualenvs/qiita/lib/python2.7/site-packages/click/core.py", line 416, in invoke
return callback(*args, **kwargs)
File "./qiita", line 123, in load_raw
raw_data = load_raw_data_cmd(fp, fp_type, filetype, study)
File "/home/qiita/qiita_main/qiita_db/commands.py", line 208, in load_raw_data_cmd
filepaths=list(zip(filepaths, filepath_types)))
File "/home/qiita/qiita_main/qiita_db/data.py", line 329, in create
rd.add_filepaths(filepaths, conn_handler)
File "/home/qiita/qiita_main/qiita_db/data.py", line 167, in add_filepaths
raise e
OSError: [Errno 30] Read-only file system: '/sequencing/ucsd/complete_runs/150420_M00436_0038_000000000-ABMKV/Data/Intensities/BaseCalls/Pool_S1_L001_I1_001.fastq.gz'