Analysis refactor master

.travis.yml

@@ -40,9 +40,10 @@ script:
   - qiita-env start_cluster qiita-general
   - qiita-env make --no-load-ontologies
   - if [ ${TEST_ADD_STUDIES} == "True" ]; then test_data_studies/commands.sh ; fi
+  - if [ ${TEST_ADD_STUDIES} == "True" ]; then qiita-cron-job ; fi
   - if [ ${TEST_ADD_STUDIES} == "False" ]; then qiita-test-install ; fi
   - if [ ${TEST_ADD_STUDIES} == "False" ]; then nosetests --with-doctest --with-coverage -v --cover-package=qiita_db,qiita_pet,qiita_core,qiita_ware; fi
-  - flake8 qiita_* setup.py scripts/qiita scripts/qiita-env scripts/qiita-test-install
+  - flake8 qiita_* setup.py scripts/*
   - ls -R /home/travis/miniconda3/envs/qiita/lib/python2.7/site-packages/qiita_pet/support_files/doc/
   - qiita pet webserver
 addons:

qiita_core/support_files/server.crt

@@ -1,15 +1,15 @@
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-/iUPu/otBw==
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+n1b0mapYTJ/Q
 -----END CERTIFICATE-----

qiita_db/artifact.py

@@ -420,6 +420,15 @@ def _associate_with_analysis(instance, analysis_id):
                 sql_args = [(instance.id, p.id) for p in parents]
                 qdb.sql_connection.TRN.add(sql, sql_args, many=True)
 
+                # inheriting visibility
+                visibilities = {a.visibility for a in instance.parents}
+                # set based on the "lowest" visibility
+                if 'sandbox' in visibilities:
+                    instance.visibility = 'sandbox'
+                elif 'private' in visibilities:
+                    instance.visibility = 'private'
+                else:
+                    instance.visibility = 'public'
             elif prep_template:
                 # This artifact is uploaded by the user in the
                 # processing pipeline