2024.10

Deployed on October 14th, 2024

• Added update_resource_allocation_redis and companion code, so resource allocations summaries are available for review. Thank you @Gossty!
• Now is possible to have default workflows with only one step.
• qiita_client.update_job_step now accepts an ignore_error optional parameter. Thank you @charles-cowart!
• Initial changes in qiita_client to have more accurate variable names: QIITA_SERVER_CERT -> QIITA_ROOTCA_CERT. Thank you @charles-cowart!
• Added get_artifact_html_summary to qiita_client to retrieve the summary file of an artifact.
• Re-added github actions to https://github.com/qiita-spots/qiita_client.
• SortMeRNA v4.3.7 superseded Sortmerna v2.1b, which relies on Silva 138 and now produced even mates. Thank you @ekopylova and @biocodz for the support.
• Remove SynDNA reads superseded SynDNA Woltka, which now generates even mates.
• Woltka v0.1.7, paired-end superseded Woltka v0.1.6 in qp-woltka; more information. Thank you to @qiyunzhu for the benchmarks!
• Other general fixes, like #3424, #3425, #3439, #3440.
• General SPP improvements, like: NuQC modified to preserve metadata in fastq files, use squeue instead of sacct, , job aborts if Qiita study contains sample metadata columns reserved for prep-infos, metapool generates OverrideCycles value.
• We updated the available parameters for Filter features against reference [filter_features], Non V4 16S sequence assessment [non_v4_16s] and all the phylogenetic analytical commands so they can use Greengenes2 2024.09.