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[SUGGESTED FEATURE] Dockerized Woltka with numba acceleration #170

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Dane-Z opened this issue Dec 6, 2022 · 0 comments
Open

[SUGGESTED FEATURE] Dockerized Woltka with numba acceleration #170

Dane-Z opened this issue Dec 6, 2022 · 0 comments

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@Dane-Z
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Dane-Z commented Dec 6, 2022

Hello! I'm a bioinformatics grad student currently writing a paper on this tool. My objectives are to compare the numba-accelerated version to the base version in the paper, but I noticed that Woltka currently doesn't have an image on Dockerhub, nor a dedicated Dockerfile in the Github.

I've gone ahead and dockerized Woltka, made a Dockerfile, and uploaded the container image of Woltka with numba acceleration to Dockerhub here: https://hub.docker.com/layers/danezeeb/woltka-numba-accelerated/latest/images/sha256-c22f74dd53f36941f6be4130398cdec9a59495e2774f26ee9aae3da96ce8e988?context=repo

The Docker container image currently pips numba and woltka then downloads the test data zip file, unzips it, and puts users in the test directory. This can be pared down to only download woltka and numba without downloading the test data, or download woltka without numba in other tagged versions.

If you'd like, I can make a branch and submit a pull request with the Dockerfile so that it can exist on the Github as well.

Cheers and keep up the good work for this exciting project,
Dane Zeeb

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