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49 Open 30 Closed
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Issues list

Woltka classify errors with tiny samples
#216 opened Dec 7, 2024 by ElDeveloper
1
Sequence depth normalization after woltka classification
#211 opened Oct 7, 2024 by UniAlberta
4
[Bug] KEGG database is missing reactions in certain modules
#207 opened May 21, 2024 by jolespin
Provide organism agnostic version of pathway_mbrs.txt in the backend via EC numbers
#206 opened May 15, 2024 by jolespin
Trying to build a phylogenetic tree using output in Qiita
#203 opened Mar 29, 2024 by raytaoliu
AssertionError: Conflicting values found for "RXN-13667".
#200 opened Mar 6, 2024 by deppworld
8
match reads with genes:gloc = genes_pop(code & (1 << 30) - 1) KeyError: 3603
#188 opened Nov 13, 2023 by Dexter5577
10
KEGG pathways detected are not represented in pathway coverage results
#187 opened Aug 21, 2023 by LLansing
1
AssertionError: Conflicting values found for "1111886".
#186 opened Aug 11, 2023 by liushuqing506
3
How to get the phylogenetic tree after following the recommended process to get table.biom
#185 opened Jul 6, 2023 by diego00012138
2
ValueError: cannot call vectorize on size 0 inputs unless otypes is set
#184 opened May 15, 2023 by samd1993
[SUGGESTED FEATURE] Dockerized Woltka with numba acceleration
#170 opened Dec 6, 2022 by Dane-Z
Adaptive range merging policy enhancement New feature or request
#138 opened Sep 5, 2021 by qiyunzhu
Have conversion from stratified biom to melted pandas table / tensor
#125 opened Jun 23, 2021 by mortonjt
4
Odd error behavior when passing incorrect read-to-rank-maps directory to classify function
#115 opened Apr 6, 2021 by droush
Allow for multiple stratification levels at once during functional classification
#114 opened Apr 6, 2021 by droush
Combined genome/gene profile allowing stratification enhancement New feature or request
#109 opened Apr 3, 2021 by qiyunzhu
possible to merge results of multiple input parameters or error out? enhancement New feature or request
#98 opened Jan 25, 2021 by antgonza
@qiyunzhu
1
Implement LFU cache to replace LRU cache for speed-up enhancement New feature or request
#83 opened Jul 6, 2020 by qiyunzhu
Considerations of decimal or fraction arithmetic documentation Improvements or additions to documentation
#72 opened Jul 3, 2020 by qiyunzhu
2
Centrifuge paired-end alignment file is not serial invalid This doesn't seem right
#66 opened Jun 28, 2020 by qiyunzhu
Benchmarks of LCA functions documentation Improvements or additions to documentation
#65 opened Jun 28, 2020 by qiyunzhu
4
Benchmark: read map data structure documentation Improvements or additions to documentation
#54 opened Jun 23, 2020 by qiyunzhu
6
SAM strand suffix optimization
#51 opened Jun 21, 2020 by qiyunzhu
Benchmarks of individual steps documentation Improvements or additions to documentation
#50 opened Jun 21, 2020 by qiyunzhu
2
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