Move fixtures into conftest.py
#331
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p-j-smith
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* Update plugin reader to return early for unsupported filetypes * Add a function btrack.utils.napari_to_tracks Converts napari layer data into a list of Tracklets * Add hdf writer function to the plugin * Add plugin writer to napari config * Use empty dict for graph and properties if they are not layer metadata * Determine parent, root, and children from graph if it exists * Make black happy * Add the tracks.h5 example dataset * Set correct parent, root, and generation when converting napari to track * Add test for btrack.utils.napari_to_tracks The z-coordinates are not compared as dummy objects in the sample set have non-zero values even though it's a 2D dataset * Use constants.States enum when setting default label rather int literal Also inherit from enum.IntEnum for constants.States otherwise numpy complains that it can't be used to set as a fill value with np.full_like * Upgrade `cvxopt` (#348) * Update `pre-commit` and make some other fixes * Update version pins * Remove references to `cvxopt` * Add type Co-authored-by: Alan R Lowe <code@arlowe.co.uk> * Use `|=` * Remove extra dependencies --------- Co-authored-by: Alan R Lowe <code@arlowe.co.uk> * Move `fixture`s into `conftest.py` (#331) * Move `fixture`s into `conftest.py` * Just import `btrack` * Move `Container` * Fix tests * Rename writer * Use `qtpy` * Don't set widget values in the widgets (as done from file) (#379) * Remove unnecessary `.setValue` calls * Check status done by config file * Don't store refs when converting tracks to napari * Fix description of return values from napari_to_tracks --------- Co-authored-by: Patrick Roddy <patrickjamesroddy@gmail.com> Co-authored-by: Alan R Lowe <code@arlowe.co.uk>
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Fixes #288