setup-r not working on macos-13 runners

[grimbough]

Describe the bug

I'm currently unable to use the setup-r action on macos-13 runners. It fails at the "Downloading macOS utils" step with the error:

Error: Failed to get R devel: Failed to get R 4.4.0: Failed to install qpdf: Error: The process '/usr/local/bin/brew' failed with exit code 1

To Reproduce

A link to a failed run of the action can be found at: https://github.com/grimbough/test-workflow/actions/runs/8358075235/job/22878572700

The fairly minimal workflow file is:

on:
  workflow_dispatch:
  
name: Quick tests of setup-r action

env:
  GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

jobs:

  testing:
    name: Test setup-r action
    runs-on: macos-13
    steps:    
      - name: Setup R
        uses: r-lib/actions/setup-r@v2

Expected behavior

The action seems to work fine on the GitHub runners using other MacOS version and it's be great to restore that behaviour on macos-13.

Additional context

I've noticed that the GitHub runner macos-13 base image has changed a bit recently e.g. there's no existing installation of R on there any more (actions/runner-images@7535fb5). Perhaps those recent changes are releated to this issue.

[gaborcsardi]

This is a bug in homebrew, add

    env:
      HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: true

to your workflow, to the setup-r step or the whole job.

[gaborcsardi]

Most probably it'll also go away when GitHub rolls out a runner image with a more recent homebrew installation. The macos-13 images hasn't been updated for about 50 days now:

Image Version: 20240204.1

https://github.com/actions/runner-images/blob/main/images/macos/macos-13-Readme.md

[gaborcsardi]

Added that env var to @v2 so it should work now.

[grimbough]

Thanks for the super speedy response. That does seem to have resolved the issue, and has the nice effect of also reducing the runtime from > 7 minutes to < 1 minute.

[github-actions]

This issue has been automatically locked. If you believe you have found a related problem, please file a new issue and include a link to this issue