tic-db #1677
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ## tic GitHub Actions template: linux | |
| ## revision date: 2021-06-27 | |
| # [Custom header] | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| # for now, CRON jobs only run on the default branch of the repo (i.e. usually on master) | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| - cron: "0 4 * * *" | |
| name: tic-db | |
| jobs: | |
| all: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # use a different tic template type if you do not want to build on all listed platforms | |
| - { os: ubuntu-latest, r: "release" } | |
| services: | |
| postgres: | |
| image: kartoza/postgis | |
| ports: | |
| - 5432:5432 | |
| env: | |
| # otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| CRAN: ${{ matrix.config.cran }} | |
| # make sure to run `tic::use_ghactions_deploy()` to set up deployment | |
| TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }} | |
| # prevent rgl issues because no X11 display is available | |
| RGL_USE_NULL: true | |
| # if you use bookdown or blogdown, replace "PKGDOWN" by the respective | |
| # capitalized term. This also might need to be done in tic.R | |
| BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} | |
| # macOS >= 10.15.4 linking | |
| SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk | |
| # use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| Ncpus: 4 | |
| # LaTeX. Installation time: | |
| # Linux: ~ 1 min | |
| # macOS: ~ 1 min 30s | |
| # Windows: never finishes | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| if: matrix.config.latex == 'true' | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| # set date/week for use in cache creation | |
| # https://github.saobby.my.eu.orgmunity/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 | |
| # - cache R packages daily | |
| # - name: "[Cache] Prepare daily timestamp for cache" | |
| # if: runner.os != 'Windows' | |
| # id: date | |
| # run: echo "::set-output name=date::$(date '+%d-%m')" | |
| # - name: "[Cache] Cache R packages" | |
| # if: runner.os != 'Windows' | |
| # uses: pat-s/always-upload-cache@v2 | |
| # with: | |
| # path: ${{ env.R_LIBS_USER }} | |
| # key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
| # restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
| - name: "[Stage] [Linux] Install required system libs" | |
| if: runner.os == 'Linux' | |
| run: sudo apt install libcurl4-openssl-dev libgit2-dev | |
| # for some strange Windows reason this step and the next one need to be decoupled | |
| - name: "[Stage] Prepare" | |
| run: | | |
| Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')" | |
| Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')" | |
| - name: "[Custom block] [Linux] Install spatial libraries" | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev | |
| - name: "[Custom block] [macOS] Install spatial libraries" | |
| if: runner.os == 'macOS' | |
| run: | | |
| # conflicts with gfortran from r-lib/actions when linking gcc | |
| rm '/usr/local/bin/gfortran' | |
| brew install pkg-config gdal proj geos | |
| - name: "[Stage] [macOS] Install libgit2" | |
| if: runner.os == 'macOS' | |
| run: brew install libgit2 | |
| - name: "[Stage] [macOS] Install system libs for pkgdown" | |
| if: runner.os == 'macOS' && matrix.config.pkgdown != '' | |
| run: brew install harfbuzz fribidi | |
| - name: "[Stage] [Linux] Install system libs for pkgdown" | |
| if: runner.os == 'Linux' && matrix.config.pkgdown != '' | |
| run: sudo apt install libharfbuzz-dev libfribidi-dev | |
| # Try to automatically check for system dependencies and install them | |
| # Note: this might not catch all required system libs and manual action might be needed | |
| - name: "[Stage] [Linux] Install linux system dependencies" | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: "[Stage] Install" | |
| if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel' | |
| run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" | |
| # macOS devel needs its own stage because we need to work with an option to suppress the usage of binaries | |
| - name: "[Stage] Prepare & Install (macOS-devel)" | |
| if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel' | |
| run: | | |
| echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile | |
| Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" | |
| - name: "[Stage] Script" | |
| run: Rscript -e 'tic::script()' | |
| - name: "[Stage] After Success" | |
| if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' | |
| run: Rscript -e "tic::after_success()" | |
| - name: "[Stage] Upload R CMD check artifacts" | |
| if: failure() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |