Snakemake pipeline for generating and running on new simulated data for HATCHet2 revisions
This pipeline refers to MASCoTE simulated genomes, which are TSV files available from the hatchet-paper repository: https://github.com/raphael-group/hatchet-paper/tree/master (e.g., https://github.com/raphael-group/hatchet-paper/blob/master/simulation/data/WGD/dataset_n2_s14855/tumor/copynumbers.csv)