Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add Euclidean distance transform for images/volumes #318

Merged
merged 12 commits into from
Jul 28, 2022
Merged

Add Euclidean distance transform for images/volumes #318

merged 12 commits into from
Jul 28, 2022

Commits on Jun 27, 2022

  1. add license info for the PBA+ algorithm

    @grlee77
    grlee77 committed Jun 27, 2022
    Configuration menu
    Copy the full SHA
    8e9b5a5 View commit details
    Browse the repository at this point in the history

  2. Add distance_transform_edt implementation based on PBA+

    @grlee77
    grlee77 committed Jun 27, 2022
    Configuration menu
    Copy the full SHA
    0462a2c View commit details
    Browse the repository at this point in the history

Commits on Jun 28, 2022

  1. add tests for 2d distance transform 

    fix automated setting of m1, m2, m3 parameters for 2D PBA+
    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    6a9997f View commit details
    Browse the repository at this point in the history

  2. Update 3D kernels to allow use of size > 1024 per axis 

    When switching to 64-bit int can go up to size 2**20 on each axis.
    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    3d44899 View commit details
    Browse the repository at this point in the history

  3. expand tests and extend to 3D cases

    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    8509bff View commit details
    Browse the repository at this point in the history

  4. test error on non-uniform sampling

    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    0933d73 View commit details
    Browse the repository at this point in the history

  5. flake8/isort fixes

    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    e98b611 View commit details
    Browse the repository at this point in the history

  6. minor update to kernel headers

    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    e5a37a9 View commit details
    Browse the repository at this point in the history

  7. update outdated comment

    @grlee77
    grlee77 committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    e83d9a7 View commit details
    Browse the repository at this point in the history

Commits on Jun 29, 2022

  1. add fallback implementation of math.lcm for Python < 3.9

    @grlee77
    grlee77 committed Jun 29, 2022
    Configuration menu
    Copy the full SHA
    c67b7c4 View commit details
    Browse the repository at this point in the history

  2. make sure fallback lcm function is actually used if needed

    @grlee77
    grlee77 committed Jun 29, 2022
    Configuration menu
    Copy the full SHA
    cb06d78 View commit details
    Browse the repository at this point in the history

Commits on Jul 27, 2022

  1. Apply suggestions from code review 

    remove irrelevant text (copy/paste error)
    @grlee77
    grlee77 authored Jul 27, 2022
    Configuration menu
    Copy the full SHA
    2a190b3 View commit details
    Browse the repository at this point in the history