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Compute whole column variance using numerically stable approach #16448

Merged
merged 14 commits into from
Oct 8, 2024
Merged

Compute whole column variance using numerically stable approach #16448

merged 14 commits into from
Oct 8, 2024

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wence-
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@wence- wence- commented Jul 31, 2024 •
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Description

We use the pairwise approach of Chan, Golub, and LeVeque (1983).

Checklist

  • I am familiar with the Contributing Guidelines.
  • New or existing tests cover these changes.
  • The documentation is up to date with these changes.

@wence-
Compute whole column variance using numerically stable approach
17185c5 
We use the pairwise approach of Chan, Golub, and LeVeque (1983).

- Closes rapidsai#16444
@github-actions github-actions bot added the libcudf Affects libcudf (C++/CUDA) code. label Jul 31, 2024
@wence- wence- added bug Something isn't working non-breaking Non-breaking change and removed libcudf Affects libcudf (C++/CUDA) code. labels Jul 31, 2024
@wence-
Adapt tests to compute host variance with two pass algorithm
b1c6a5a 
We now need to compare to a tolerance, which was probably the case
before, except we were getting lucky.
@github-actions github-actions bot added the libcudf Affects libcudf (C++/CUDA) code. label Aug 1, 2024
@wence- wence- marked this pull request as ready for review August 1, 2024 11:31
@wence- wence- requested review from a team as code owners August 1, 2024 11:31
@github-actions github-actions bot added the Java Affects Java cuDF API. label Aug 1, 2024
@wence- wence- marked this pull request as draft August 1, 2024 16:07
@wence-
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wence- commented Aug 1, 2024

Back into draft while I figure out some edges cases around NAs.

@github-actions github-actions bot added the Python Affects Python cuDF API. label Aug 2, 2024
@wence-
Merge branch 'branch-24.12' into wence/fix/16444
843eee2
@wence-
Fix early exit for mean
9fb90aa 
The ddof argument is meaningless for mean reductions, so we should not
consider it when determining whether the result will be valid.
@wence-
Postprocess NA to nan
5c6250e 
Now that we don't launch a kernel for some std and variance
reductions, we might just get NA rather than nan. Match old behaviour
by producing a nan of the right type.
@wence-
These tests now pass
88444f0
@github-actions github-actions bot added CMake CMake build issue cudf.pandas Issues specific to cudf.pandas cudf.polars Issues specific to cudf.polars labels Sep 30, 2024
@github-actions github-actions bot added the pylibcudf Issues specific to the pylibcudf package label Sep 30, 2024
@wence- wence- changed the base branch from branch-24.10 to branch-24.12 September 30, 2024 17:38
@wence- wence- removed CMake CMake build issue cudf.pandas Issues specific to cudf.pandas cudf.polars Issues specific to cudf.polars pylibcudf Issues specific to the pylibcudf package labels Sep 30, 2024
@wence- wence- marked this pull request as ready for review September 30, 2024 17:39
@wence- wence- requested a review from a team as a code owner September 30, 2024 17:39
bdice
bdice approved these changes Sep 30, 2024
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One suggestion, otherwise LGTM. Thank you for the attention to details throughout this PR!

cpp/src/reductions/compound.cuh Outdated Show resolved Hide resolved
bdice
bdice approved these changes Oct 7, 2024
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Re-approving latest changes.

revans2
revans2 approved these changes Oct 7, 2024
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For the java side of things, these tests are there just to verify that we plumbed thing up correctly and we are calling into the C++/cuda code correctly. Spark uses a totally different method to compute the population variance in a distributed way so we don't actually call into this code.

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wence- commented Oct 7, 2024

/merge

nvdbaranec
nvdbaranec reviewed Oct 7, 2024
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Couple of very small things.

cpp/include/cudf/reduction/detail/reduction_operators.cuh Outdated Show resolved Hide resolved
cpp/tests/reductions/reduction_tests.cpp Show resolved Hide resolved
@rapids-bot rapids-bot bot merged commit bcf9425 into rapidsai:branch-24.12 Oct 8, 2024
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@wence- wence- deleted the wence/fix/16444 branch October 8, 2024 14:43
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@bdice bdice bdice approved these changes

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@shrshi shrshi Awaiting requested review from shrshi shrshi is a code owner automatically assigned from rapidsai/cudf-cpp-codeowners

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bug Something isn't working Java Affects Java cuDF API. libcudf Affects libcudf (C++/CUDA) code. non-breaking Non-breaking change Python Affects Python cuDF API.
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cuDF Python
Status: Done
cuDF/Dask/Numba/UCX
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[BUG] whole-column variance calculation uses numerically unstable algorithm
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@wence- @revans2 @bdice @mythrocks @ttnghia @davidwendt @nvdbaranec