Merge pull request #60 from rapidsurveys/dev

refresh package

.github/workflows/R-CMD-check.yaml

@@ -6,7 +6,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:

.github/workflows/pkgdown.yaml

@@ -9,7 +9,9 @@ on:
     types: [published]
   workflow_dispatch:
 
-name: pkgdown
+name: pkgdown.yaml
+
+permissions: read-all
 
 jobs:
   pkgdown:

.github/workflows/test-coverage.yaml

@@ -6,7 +6,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -23,18 +25,27 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |

DESCRIPTION

@@ -31,8 +31,8 @@ Suggests:
 Encoding: UTF-8
 Language: en-GB
 LazyData: true
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Roxygen: list(markdown = TRUE)
-URL: https://github.com/rapidsurveys/odkr, https://rapidsurveys.io/odkr,
+URL: https://github.com/rapidsurveys/odkr, https://rapidsurveys.io/odkr, https://rapidsurveys.io/odkr/
 BugReports: https://github.com/rapidsurveys/odkr/issues
 Config/testthat/edition: 3

pkgdown/_pkgdown.yml

@@ -18,11 +18,6 @@ navbar:
     left:  [home, intro, reference, articles, news]
     right: [mastodon, linkedin, github]
   components:
-    # articles:
-    #   text: Articles
-    #   menu:
-    #   - text: "Africa CDC"
-    #     href: articles/africa-cdc.html
     mastodon:
       icon: "fab fa-mastodon fa-lg"
       href: https://fosstodon.org/@katilingban