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update MANUAL
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yizhong committed Oct 3, 2016
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Expand Up @@ -110,5 +110,8 @@ Similar to many other RNA-Seq based tools, RiboDiff uses negative binomial distr
model the read count, which handles larger variation across samples than Poisson. However,
if the randomness of count data from certain types of samples are extremely large, limited
number of replicates cannot provide a good estimation on dispersion, which ends up with
less significant results.
less significant results. Also, we suggest the users to figure out the correlation between
replicates. Removing the outliers of replicates before running RiboDiff is recommended.



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