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An eclectic selection of useful shell scripts designed for different purposes, from everyday automation to data analysis

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shell_scripts

Description

A set of shell scripts: an eclectic selection of useful [mainly] bash scripts designed for different purposes, from everyday automation to data analysis.

data_analysis

Scripts used for the analysis of different types of data:

  • RNA-Seq
  • CHiP-Seq
  • Agilent microarray (aCGH)
  • Affymetrix microarray

p4_reprocessing

Scripts used in the remapping of samples using [P4] (https://github.com/wtsi-npg/p4)

useful

Scripts used in everyday situations and save you some time: be as lazy as possible.

Installation

No special installation method, just copy the bin directory or its contents in a convenient location in your system.

Documentation

Data Analysis

Analysis of Affymetrix data

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An eclectic selection of useful shell scripts designed for different purposes, from everyday automation to data analysis

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