Data processing and analysis scripts for for Oudelaar, Beagrie et al. 2020
Raw sequencing data can be found at GEO
├── Makefile <- Makefile with commands for setting up the repository
├── README.md <- This top-level README
├── data
│ ├── intermediate <- Intermediate data analysis files
│ ├── processed <- The final, canonical data sets
│ └── raw <- The original, immutable data
│
├── notebooks <- Jupyter notebooks. Naming convention is a number (for ordering),
│ and a short description
│
├── out <- Generated analysis as HTML, PDF, LaTeX, etc.
│ └── figures <- Generated graphics and figures to be used in reporting
│
├── requirements.txt <- The requirements file for reproducing the analysis environment, e.g.
│ generated with `pip freeze > requirements.txt`
│
└── lib <- Source code for use in this project.
│
└── oudelaar-tiled-capture-2019 <- Module containing re-usable code for project
└── __init__.py