global: upgrade jupyter env tag to 2.0.0

Back to a single notebook file with Python3 kernel. closes reanahub/reana-env-jupyter#6
reanahub · Aug 25, 2021 · f7fb7cb · f7fb7cb
1 parent c4a71a4
commit f7fb7cb
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Showing 12 changed files with 52 additions and 164 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -28,7 +28,7 @@ jobs:
       - name: Validate workflow
         run: yadage-validate workflow/yadage/workflow.yaml | grep -q 'workflow validates'
 
-      - run: docker run -i --rm -v `pwd`:/workdir reanahub/reana-env-jupyter:1.0.0 bash -c '
+      - run: docker run -i --rm -v `pwd`:/workdir reanahub/reana-env-jupyter:2.0.0 bash -c '
               cd /workdir &&
               mkdir -p ./results &&
               papermill ./code/worldpopulation.ipynb /dev/null
@@ -39,4 +39,3 @@ jobs:
                 -p year_max 2010'
 
       - run: ls -l `pwd`/results/plot.png
-
diff --git a/README.rst b/README.rst
@@ -158,7 +158,7 @@ workflow steps and expected outputs:
       type: serial
       specification:
         steps:
-          - environment: 'reanahub/reana-env-jupyter:1.0.0'
+          - environment: 'reanahub/reana-env-jupyter:2.0.0'
             commands:
               - mkdir -p results && papermill ${notebook} /dev/null -p input_file ${input_file} -p output_file ${output_file} -p region ${region} -p year_min ${year_min} -p year_max ${year_max}
     outputs:

diff --git a/code/worldpopulation-py3.ipynb b/code/worldpopulation-py3.ipynb
diff --git a/code/worldpopulation.ipynb b/code/worldpopulation.ipynb
diff --git a/reana-htcondorcern.yaml b/reana-htcondorcern.yaml
@@ -14,7 +14,7 @@ workflow:
   type: serial
   specification:
     steps:
-      - environment: 'reanahub/reana-env-jupyter:1.0.0'
+      - environment: 'reanahub/reana-env-jupyter:2.0.0'
         compute_backend: htcondorcern
         htcondor_max_runtime: espresso
         commands:

diff --git a/reana-slurmcern.yaml b/reana-slurmcern.yaml
@@ -14,7 +14,7 @@ workflow:
   type: serial
   specification:
     steps:
-      - environment: 'reanahub/reana-env-jupyter:1.0.0'
+      - environment: 'reanahub/reana-env-jupyter:2.0.0'
         compute_backend: slurmcern
         commands:
           - mkdir -p results && papermill ${notebook} /dev/null -p input_file ${input_file} -p output_file ${output_file} -p region ${region} -p year_min ${year_min} -p year_max ${year_max}

diff --git a/reana.yaml b/reana.yaml
@@ -14,7 +14,7 @@ workflow:
   type: serial
   specification:
     steps:
-      - environment: 'reanahub/reana-env-jupyter:1.0.0'
+      - environment: 'reanahub/reana-env-jupyter:2.0.0'
         commands:
           - mkdir -p results && papermill ${notebook} /dev/null -p input_file ${input_file} -p output_file ${output_file} -p region ${region} -p year_min ${year_min} -p year_max ${year_max}
 outputs:

diff --git a/workflow/cwl/worldpopulation.tool b/workflow/cwl/worldpopulation.tool
@@ -6,7 +6,7 @@ class: CommandLineTool
 requirements:
   - class: InlineJavascriptRequirement
   - class: DockerRequirement
-    dockerPull: reanahub/reana-env-jupyter:1.0.0
+    dockerPull: reanahub/reana-env-jupyter:2.0.0
 
 baseCommand: ["papermill"]
 

diff --git a/workflow/snakemake/Snakefile b/workflow/snakemake/Snakefile
@@ -9,7 +9,7 @@
 #   $ cp -a ../code ../data .
 #   $ snakemake -s ../workflow/snakemake/Snakefile \
 #               --configfile ../workflow/snakemake/inputs.yaml
-#               --config notebook=code/worldpopulation-py3.ipynb -p --cores 1
+#               --config notebook=code/worldpopulation.ipynb -p --cores 1
 #   $ open results/plot.png
 
 rule all:
@@ -28,7 +28,7 @@ rule worldpopulation:
     output:
         output_file=config["output_file"]
     container:
-        "docker://reanahub/reana-env-jupyter:1.0.0"
+        "docker://reanahub/reana-env-jupyter:2.0.0"
     shell:
         "mkdir -p results && papermill {input.notebook} /dev/null -p "
         "input_file {input.input_file} -p output_file {output.output_file} "

diff --git a/workflow/yadage/workflow-htcondorcern.yaml b/workflow/yadage/workflow-htcondorcern.yaml
@@ -37,7 +37,7 @@ stages:
         environment:
           environment_type: 'docker-encapsulated'
           image: 'reanahub/reana-env-jupyter'
-          imagetag: '1.0.0'
+          imagetag: '2.0.0'
           resources:
             - compute_backend: htcondorcern
             - htcondor_max_runtime: espresso
diff --git a/workflow/yadage/workflow-slurmcern.yaml b/workflow/yadage/workflow-slurmcern.yaml
@@ -37,6 +37,6 @@ stages:
         environment:
           environment_type: 'docker-encapsulated'
           image: 'reanahub/reana-env-jupyter'
-          imagetag: '1.0.0'
+          imagetag: '2.0.0'
           resources:
             - compute_backend: slurmcern
diff --git a/workflow/yadage/workflow.yaml b/workflow/yadage/workflow.yaml
@@ -37,4 +37,4 @@ stages:
         environment:
           environment_type: 'docker-encapsulated'
           image: 'reanahub/reana-env-jupyter'
-          imagetag: '1.0.0'
+          imagetag: '2.0.0'