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Thibaut Jombart edited this page Jun 21, 2016 · 1 revision

Handling, visualising and analysing contact data during outbreaks

What we want to do

get data in from reported contact lists (=edges and edge attributes) and line lists (=nodes attributes)
visualise network
handle directionality
visualise node metadata
visualise edge metadata
visualise data as time-constrained graph
subset by node metadata
subset by edge metadata
analysis: degree distribution, centrality, lengths of chains, other descriptors of networks

Existing tools

Neo4J and RNeo4J
visNetwork
igraph
networkD3
ggnetwork
network
networkDynamic
muxViz
gephi (non R, open source)
GoData (WHO initiative, check development status and licence)

Available data

simulated Ebola data in 'outbreaks'
SL data (non public)
Finlay's simulator
Bertrand's Ebola data

Team composition

Maria Van Kerkhove
Tom Crellen
Bertrand Sudre
VP Nagraj
Nistara Randhawa
Finlay Campbell
Thibaut Jombart