AGC 3.2.1

Small bugfix in linking for ARM linux

AGC 3.2

• Improved compression speed.
• Optional fallback procedure to improve compression ratio.
• Streaming mode for decompression - slower, but less memory needed.
• Binaries (agc command-line tool and libraries) are now in the bin directory.
• Small bug fixes.

AGC 3.1

• Improved compression speed for gzipped input.
• Support for ARM-based CPUs (e.g., Mac M1/M2/...).
• Reporting reference sample name.
• Fixed truncating .fa from gzipped input.
• Fixed Python lib GetCtgSeq().
• Added optional gzipping in decompression modes.
• Small bugfixes.

AGC 3.0

• Slightly better compresion ratio.
• New archive format (AGC 3 still can use archives produced by all previous versions) for faster queries in large datasets.
• Bugfixes.

AGC 2.1

• Bugfix for append mode. (In version 2.0, running append could produce an improper archive.)

AGC 2.0

• A bit better compression ratio
• Improved decompression time
• Adaptive compression mode (important for highly divergent genomes, like bacteria)
• Added new mode: decompression of the whole collection
• Small bug fixes

AGC 1.1

Some small bug fixes in extraction:

• removed unnecessary warnings,
• removed strange coordinates in contig header.

AGC 1.0

First release of AGC