Rho repetitiveness measure

Overview

Computes the rho repetitiveness measure (work in progress)

Funding

This project has received funding from the European Research Council (ERC) under the European Union’s Horizon Europe research and innovation programme, project REGINDEX, grant agreement No 101039208

Install

git clone https://github.com/nicolaprezza/rho
cd rho
mkdir build
cd build
cmake ..
make

Run

Input: a BWT in ASCII format, containing only characters A,C,G,T,N,# (the latter is the string terminator).

To compute rho given as input a BWT, run

rho -i bwt