Empty sequence in output file

[Isoobel]

Hello everyone,

I ran a short test on skewer and I got an empty sequence in the output file.
I know this case is not supposed to happen since I tried to remove an adapter supposed to be located at the read head, but in fact it is at the tail.
But maybe it would be nice remove the header too?

Here is the input file I used to test the adapters filtering:

seq1
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTT
seq2
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTAAAA
seq3
AAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA
seq4
TTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

I launched skewer with the following command line:
skewer -x TTTTTTTTTTTTTTTTTTTT -1 -l 0 -k 15 -t 16 -m head input.fasta >output.fasta

Here is the output fasta file I obtained:

seq1

seq2
AAAA
seq3
AAAAAAAAAAAAAAAAAAAAAAAAA
seq4
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Thanks for your help!