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38 Open 9 Closed
38 Open 9 Closed
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Issues list

MAX_PATH limits use with cromwell
#56 opened Jan 3, 2024 by JenniferShelton
Read length distribution in log file
#54 opened Jul 27, 2022 by MagdalenaFeldhahn
'is_invocable' error when compiling in Cygwin
#53 opened Mar 16, 2022 by AlexSath
empty read pairs
#52 opened Jan 21, 2022 by nick-youngblut
manual
#50 opened May 26, 2021 by kkleinoros
Output file name
#49 opened Aug 14, 2020 by lczech
Where is the binary?
#48 opened Mar 12, 2019 by theo-allnutt-bioinformatics
2
Would be nice to include local ./configure option
#47 opened Jan 12, 2018 by jennformatics
1
broken link to ART
#46 opened Nov 10, 2017 by 0xaf1f
Quality trimming on the 3' end
#45 opened Oct 30, 2017 by royfrancis
Hard clip 5' for PE reads
#44 opened Oct 30, 2017 by royfrancis
Error in barcode dispatch after trimming
#42 opened May 3, 2017 by cbligaard
Why are there more untrimmed reads after decreasing error rate allowed?
#41 opened Mar 9, 2017 by qslin
add manual from sourceforge
#40 opened Feb 24, 2017 by DSLituiev
Paired-end mode : Read1 quality revision
#39 opened Dec 28, 2016 by hubert93
Adapters file must end by a new line?
#37 opened Jun 9, 2016 by Isoobel
Empty sequence in output file
#36 opened Jun 9, 2016 by Isoobel
Discard non-clipped sequence after adapter clipping
#35 opened May 6, 2016 by hioymaci
trimming beyond adapter?
#34 opened Apr 25, 2016 by RichardCorbett
1
any mode is missing 5 prime adaptors
#32 opened Mar 23, 2016 by jblachly
1
gzip compressed output reduces speed by two-thirds
#31 opened Mar 23, 2016 by jblachly
1
gzip rsyncable error
#30 opened Mar 23, 2016 by ta-cameron
1
--barcodecutR2 N option
#29 opened Feb 22, 2016 by avilella
Add summary of adapter trimming, similar to cutadapt (example attached)
#27 opened Feb 18, 2016 by jdidion
1
Mis-classifying Sanger+33 FASTQ as Solexa+64
#24 opened Feb 12, 2016 by tseemann
1
ProTip! Updated in the last three days: updated:>2024-09-29.