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Adapters file must end by a new line? #37

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Isoobel opened this issue Jun 9, 2016 · 0 comments

Isoobel commented Jun 9, 2016

It seems that the input adapters file must end by a new line or the last adapter sequence will be truncated (the last nucleotide will be removed).

For example this adapters file:
">adapt1
CTCTCTCTCTCTCTA

adapt2
GTGTGTGTGTGTA"

When skewer is launched, it will use the following adapters:
'CTCTCTCTCTCTCTA'
'GTGTGTGTGTGT'

If a new line is added:
">adapt1
CTCTCTCTCTCTCTA

adapt2
GTGTGTGTGTGTA
"

Skewer uses the correct adapters sequences:
'CTCTCTCTCTCTCTA'
'GTGTGTGTGTGTA'

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