Output file name

[lczech]

Hi there!

The help states:

-o, --output <str>   Base name of output file; ('<reads>.trimmed')

However, the output files instead are prefixed by <str>-trimmed instead, followed by .<ext> for the fastq(.gz) and log files. That is, the help message should replace <reads> by <str>, and the . dot by a - dash.

This is just a minor issue, but still caused confusion, as I am trying to write a Snakemake pipeline that relies on specific file names.

Thanks
Lucas