Code

Feature/result cast#989

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Jammy2211 merged 81 commits intomainrhayes777/PyAutoFit:mainfrom feature/result_castrhayes777/PyAutoFit:feature/result_castCopy head branch name to clipboardApr 8, 2024

Commits

Commits on Mar 19, 2024

• new implementation for computing latent variables

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• integrated new latent variables implementation

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• docs

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• unused import

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Commits on Mar 22, 2024

• first refactor, placing samples summary in result

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• nows uses samples summary max likelihood

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• median PDF added to samples summary and used for prior linking

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• remove covariance matrix

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• fix median pdf

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• result now only uses samples summary for prior linking

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• remove sky save samples

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• fix creation of Samples Summary so it doesnt use covariance matrix

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• samples summary no longer has model

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• result_via_completed_fit clean and documented

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• clean up perform update

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• mockSamplesSummary to fix some test

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• fix unit tests by using MockResult

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• test_abstract_search uses MockSamplesSummary

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• fix result json

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• hack to fix emcee

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• docs

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Commits on Mar 23, 2024

• docs refactoring

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• added latent variable output.yaml parameters

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• latent_variables.csv -> latent.csv

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• docs

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Commits on Mar 24, 2024

• added likelihood check to fitness function

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• likelihood check now works

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• update all Fitness classes with paths

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• division by zero warning in inv_transform surpressed

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• fix DeprecationWarning: invalid escape sequence '\i' warning

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• test specific warning caught

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• update docstring and make paths for fitness optional

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• Merge branch 'feature/likelihood_check' into feature/keep_the_noise_down

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• surpress enviroment variable warnings

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• transform surpress

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• fix eniroment warning unit test

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• silence sneaky map test warning

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• close matplotlib figures in graph plots to avoid noise

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• move dynesty suprression

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• more transform warnings

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• more quieting

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• another thing quiet

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Commits on Mar 25, 2024

• fixed a test

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• fixing tests...

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• fixed a test

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• fixed a test

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• fixed a test

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  b2b93a6

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• fixed test

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• skip computing median pdf for generic samples summary

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• ensure ModelAnalysis.make_result conforms to super

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• mock result with default mock samples summary

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• more fixes

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• fixes

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• fix more tests by moving arguments to MockSamplesSummary

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• another fix by providing median pdf sample

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• small fixes

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• mock samples generates kwargs

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• fixed a test

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• sample summary first grid search results

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• format

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• fix missing kwargs in grid sensitivity tests

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• praise the lord another test fixed

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• remove print statement

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• consolidate fixture

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Commits on Mar 26, 2024

• fix exception

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• unit test fixed

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• MockSeardh can output Samples for aggregator tests

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• fix sensitivfty test

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• Merge branch 'feature/samples_summary_in_result' into feature/keep_the_noise_down

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• silence output warning

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• silence graphical warnings

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• corner plot only when pdf ocnverged to reduce noise

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• more silencing noise

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• merge

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Commits on Mar 29, 2024

• all tess pass

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• use getattr trick to disable Result lint errors

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• Result API added to example

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• fix latent bug

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• docs

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Commits on Apr 8, 2024

• revieew

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• more review

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