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PATH_HOST_BASE must be absolute in docker container: document (#11)
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nolan1999 authored Dec 25, 2024
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Expand Up @@ -38,7 +38,7 @@ Copy the `.env.example` file to a `.env` file at the root of the directory and d
- `PASSWORD`: password to authenticate to the [worker-facing API](https://github.com/ries-lab/DECODE_Cloud_WorkerAPI) (not required if `ACCESS_TOKEN` is set).
- Local paths:
- `PATH_BASE`: path to which to mount in the container (e.g., `/data`).
- `PATH_HOST_BASE`: path to mount on the host (e.g., `/home/user/temp/decode_cloud/mount).
- `PATH_HOST_BASE`: path to mount on the host (e.g., `/home/user/temp/decode_cloud/mount; must be absolute if running inside of a docker container).
- Timeouts:
- `TIMEOUT_JOB`: how often (in seconds) to look for a new job.
- `TIMEOUT_STATUS`: how often (in seconds) to send a keep-alive signal while processing the job.
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Coverage

Coverage Report
FileStmtsMissCoverMissing
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fetcher
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fetcher/api
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   worker.py632856%19–21, 24–25, 28–35, 43–50, 76–81, 88, 94–107, 112
fetcher/docker
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fetcher/info
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fetcher/io
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fetcher/status
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TOTAL45916165% 

Tests Skipped Failures Errors Time
24 0 💤 0 ❌ 0 🔥 33.220s ⏱️

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