README

Python scripts released to accompany the manuscript entitled “Abnormal Dosage of Ultraconserved Elements is Highly Disfavored in Healthy Cells but not Cancer Cells” by Ruth B. McCole, Chamith Y. Fonseka, Amnon Koren, and C.-ting Wu.

Correspondence to the corresponding author:
twu@genetics.med.harvard.edu. 
Department of Genetics,
77 Avenue Louis Pasteur,
NRB 264, Boston,
MA 02115, USA. 
Phone: (617) 432-4431. 
Fax (617) 432-7663.

or the first author:
rmccole@genetics.med.harvard.edu


Distributed under the following license:
Copyright 2017 Harvard University, Wu Lab

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

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Python version 2.7 is required.

Each script is equipped with a help message, accessed from the command line by using the argument -h.

Example (command prompt represented by $):

$ python clustermodule.py -h