Releases: rockt/SETH
Releases · rockt/SETH
Release 1.4.0
- Update dependencies to support Scala 2.12
- Changes for vulnerable dependencies
Release 1.3.2
Some changes to deal with newer java versions
Release 1.3.1
Solved some bugs in the named entity recognition and linking part
- Proper toHGVS for nomenclature mentions
- Proper classification of Insdels when using inexact backus naur
- Invalid transcripts for some mutations in the derby database
Also SETH explicitly supports now only Java 8 or higher
1.3
- Refactored derby-DB code (The current derby dump is no longer compatible to previous SETH versions)
- Refactored Named Entity Normalization Evaluation on Osiris code
- Refactoring of other evaluation scripts
1.2.2
- Refactoring of dbSNP-XML handling
- Added corpus statistics
- Resolved some minor bugs in scoring
- Cleanup of code and database
1.2.1
- Better documentation and error handling
- Improved HGVS handling
- Read regular expressions for MutationFinder from either local file system or Java Artifact
- Added default constructor for class SETH with default parameters for the different subclasses
- Refactored Maven artifacts for much smaller JAR
- Refactored code for parsing dbSNP and UniProt-KB XML files
SETH v1.1
New features:
- Added flag to indicate if a mutation mentioned used 1-letter code. This can be useful for later disambiguation. (E.g., compare Ala123Tyr vs. ambiguous A123T)
- Arbitrary mutation mentions can now be printed as HGVS compliant mention
- Normalization to UniProt sequences now possible
Resolved bugs:
- Some mutations had a missing mutation-type or tool
- Minor problems in normalization
