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Script to parse NIST&GNPS mass spec library

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rogerwwww/ms-data-parser

 
 

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nist-parser

This repository provides helper scripts to process and filter the NIST20 library for downstream machine learning. We parse the sepctra from the .SDF file.

To export after parsing:

tar -cvf nist_processed.tar processed_data/

For a complete guide on purchasing the commercial library and download, see here.

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Script to parse NIST&GNPS mass spec library

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  • Python 80.5%
  • Jupyter Notebook 19.5%