put code initial vignette into repo #23
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Will try and get this done today @fmichonneau, shall I add it to the existing vignette (under a new heading)? Might take a little while as the example in the original one doesn't seem to work anymore... |
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I was initially thinking of having it as a separate vignette, but I think it would be fine as new heading in the existing one. Don't spend too much time on it if it doesn't work anymore. It would just be nice to have something that shows how to include the results from OTL with data from other public sources. Thanks! |
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OK, I'll see if I can cook up a new example, because it looks like the problem with the old one is on the OpenTree side OpenTreeOfLife/oti#41 |
dwinter
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Jun 22, 2015
This needs more work! It's really too long to include in this existing vignette, and the text accompanying the code needs to improve. I think it is going to be hard to make a "snappy" summary with this tree, it's just so big and there are so few coloured fish! I will keep working on this branch until I come up with something worth adding to the repo.
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dwinter
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Jul 9, 2015
Idea is just to show a simple workflow, and some of the steps usually needed to join up tips (here as a `phylo4d` object). Need to work on the text still, but think this will be the basis of the vignette
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New vignette is now merged. |
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@dwinter it would be great to have your blue fish red fish vignette in the repo.
I'm running out of time today to do it and don't want to forget, but feel free to push it if you have time.
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