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updated dependencies
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JoOkuma committed Oct 25, 2024
1 parent 01a8587 commit f04e527
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1 change: 1 addition & 0 deletions environment.yml
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Expand Up @@ -12,6 +12,7 @@ dependencies:
- jupyterlab-myst
- jupyter-book
- notebook
- postgresql
- cellpose
- coin-or-cbc
- gurobi
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3 changes: 1 addition & 2 deletions tutorial/color_tracking.md
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Expand Up @@ -59,7 +59,6 @@ def screenshot() -> None:
We will load the data and display in the viewer as an RGB image.

```{code-cell} ipython3
image = imread("multi-color-cytoplasm.tif")
print("Image array shape", image.shape)
Expand All @@ -71,4 +70,4 @@ screenshot()
The image stack have 3 channels, since we don't have multi-color segmentation model (or at least I don't), we could process each channel individually and then combine them using Ultrack's to obtain a final segmentation and tracking without complicated heuristics for multi-color tracking.
```

## Your turn!
## Your turn!

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