This is a docker image built on top of the zellkonverter R package to convert single-cell AnnData objects to SingleCellExperiment (SCE) class objects.
Run this in a directory containing file.h5ad. The output file will be sce.rds.
docker run --rm --user "$(id -u):$(id -g)" -v ${PWD}:/zell/work royfrancis/zellkonverter:1.8.0
2022 • Roy Francis