Fix error when running under radian
#1267
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: OS=${{ matrix.config.os }} R=${{ matrix.config.r }} py=${{ matrix.config.python }} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: macOS-latest , r: 'release', python: '3.10' } | |
| - { os: windows-latest, r: 'release', python: '3.10' } | |
| - { os: ubuntu-latest , r: 'release', python: '3.10' } | |
| # test R oldrel on mac too: https://github.com/RcppCore/RcppArmadillo/issues/447 | |
| - { os: macOS-latest , r: 'oldrel' , python: '3.10' } | |
| - { os: ubuntu-latest, r: 'oldrel-1', python: '3.9' } | |
| - { os: ubuntu-latest, r: 'oldrel-2', python: '3.9' } | |
| - { os: ubuntu-20.04, r: 'oldrel-3', python: '3.8' } | |
| - { os: ubuntu-20.04, r: 'oldrel-4', python: '3.8' } | |
| # https://api.r-hub.io/rversions/resolve/oldrel/4 | |
| - { os: ubuntu-latest, r: 'release', python: '3.7' } | |
| - { os: ubuntu-latest, r: 'release', python: '3.8' } | |
| - { os: ubuntu-latest, r: 'release', python: '3.9' } | |
| - { os: ubuntu-latest, r: 'release', python: '3.11' } | |
| - { os: ubuntu-latest, r: 'release', python: '3.12' } | |
| - { os: ubuntu-latest, r: 'devel', python: '3.12', http-user-agent: 'release' } | |
| # test with one debug build of python | |
| # disabled; failing presently | |
| # - { os: ubuntu-latest , r: 'release', python: 'debug' } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| # http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - uses: actions/setup-python@v4 | |
| if: matrix.config.python != 'debug' | |
| with: | |
| python-version: ${{ matrix.config.python }} | |
| - if: matrix.config.python == 'debug' | |
| name: setup python3-dbg | |
| run: | | |
| # sudo apt-get update | |
| sudo apt-get install -y python3-dbg python3-pip python3-venv | |
| # sudo rm -f /usr/bin/python3 /usr/bin/python | |
| sudo ln -sf /usr/bin/python3-dbg /usr/bin/python3 | |
| sudo ln -sf /usr/bin/python3-dbg /usr/bin/python | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck local::. | |
| cache-version: 4 | |
| upgrade: 'TRUE' | |
| - name: setup r-reticulate venv | |
| shell: Rscript {0} | |
| run: | | |
| library(reticulate) | |
| path_to_venv <- virtualenv_create( | |
| envname = "r-reticulate", | |
| python = Sys.which("python"), # placed on PATH by the setup-python action | |
| packages = c( | |
| "docutils", "pandas", "scipy", "matplotlib", "ipython", | |
| "tabulate", "plotly", "psutil", "kaleido", "wrapt" | |
| ) | |
| ) | |
| writeLines( | |
| paste0("RETICULATE_PYTHON=", virtualenv_python(path_to_venv)), | |
| Sys.getenv("GITHUB_ENV")) | |
| - uses: r-lib/actions/check-r-package@v2 |