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feat!: Improve bcf Record filter interface and improve docs #306

Merged
merged 10 commits into from
Jul 6, 2021
4 changes: 4 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,10 @@ This project adheres to [Semantic Versioning](http://semver.org/).
### Added
- `bcf::Record` methods `end`, `clear`, and `rlen` (@mbhall88)

### Changes
- `bcf::Record` methods `has_filter`, `remove_filter`, `push_filter`, and `set_filter`
all now take a byte slice (`&[u8]`) instead of an `Id`.

[Unreleased]: https://github.com/rust-bio/rust-htslib/compare/v0.36.0...HEAD

## [0.36.0] - 2020-11-23
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9 changes: 4 additions & 5 deletions src/bcf/mod.rs
Original file line number Diff line number Diff line change
Expand Up @@ -1230,7 +1230,6 @@ mod tests {
Format::VCF,
)
.expect("Error opening file.");
let header = writer.header().clone();

// Setup empty record, filled below.
let mut record = writer.empty_record();
Expand All @@ -1254,10 +1253,10 @@ mod tests {
record.push_id(b"first_id").unwrap();

assert!(record.filters().next().is_none());
record.set_filters(&[header.name_to_id(b"q10").unwrap()]);
record.push_filter(header.name_to_id(b"s50").unwrap());
record.remove_filter(header.name_to_id(b"q10").unwrap(), true);
record.push_filter(header.name_to_id(b"q10").unwrap());
record.set_filters(&["q10".as_bytes()]).unwrap();
record.push_filter("s50".as_bytes()).unwrap();
record.remove_filter("q10".as_bytes(), true).unwrap();
record.push_filter("q10".as_bytes()).unwrap();

record.set_alleles(&[b"C", b"T", b"G"]).unwrap();

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