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Do not list dependency packages by MetadataCommand
When following `cargo-fuzz` tutorial at https://rust-fuzz.github.io/book/cargo-fuzz/tutorial.html, after executing `cargo fuzz init`, `fuzz/Cargo.toml` contains entry `[dependencies.matches]` instead of `[dependencies.url]`. This is caused by `MetadataCommand` listing dependency packages in addition to main packages which is not desired. This does work as expected if result of `MetadataCommand` contains the first package as the non-dep package but that does not seem to work all the time.
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