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Fix timeouts firing while tarballs are extracted
This commit fixes #6125 by ensuring that while we're extracting tarballs or doing other synchronous work like grabbing file locks we're not letting the timeout timers of each HTTP transfer keep ticking. This is curl's default behavior (which we don't want in this scenario). Instead the timeout logic is inlined directly and we manually account for the synchronous work happening not counting towards timeout limits. Closes #6125
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