Migrate to Gadugi repository for shared agents

.claude/agent-manager/config/gadugi.yaml

@@ -0,0 +1,35 @@
+# Agent Manager Configuration for Gadugi Repository
+
+repositories:
+  - name: "gadugi"
+    url: "https://github.com/rysweet/gadugi"
+    type: "github"
+    branch: "main"
+    auth:
+      type: "public"
+    priority: 1
+    auto_update: true
+    description: "Community-driven collection of reusable Claude Code agents"
+
+settings:
+  # Update behavior
+  auto_update: true
+  check_interval: "24h"
+  update_on_startup: true
+
+  # Cache settings
+  cache_ttl: "7d"
+  max_cache_size: "50MB"
+  offline_mode: false
+
+  # Security settings
+  verify_checksums: true
+  allow_unsigned: false
+  scan_agents: true
+
+  # Agent selection
+  install_all_on_init: false
+  auto_install_categories:
+    - "workflow"
+    - "quality"
+    - "infrastructure"

.claude/agents/agent-manager.md

@@ -517,32 +517,138 @@ check_and_update_agents() {
 setup_startup_hooks() {
     echo "🔗 Setting up Agent Manager startup hooks..."
 
-    # Create or update Claude Code hooks configuration
-    local hooks_config=".claude/hooks.json"
+    local settings_file=".claude/settings.json"
+    local backup_file=".claude/settings.json.backup.$(date +%s)"
 
-    cat > "$hooks_config" << 'EOF'
+    # Create backup if settings.json exists
+    if [ -f "$settings_file" ]; then
+        echo "💾 Creating backup of existing settings.json..."
+        cp "$settings_file" "$backup_file"
+    fi
+
+    # Create default settings if file doesn't exist
+    if [ ! -f "$settings_file" ]; then
+        echo "📄 Creating new settings.json file..."
+        mkdir -p ".claude"
+        echo "{}" > "$settings_file"
+    fi
+
+    # Read existing settings
+    local existing_settings
+    if ! existing_settings=$(cat "$settings_file" 2>/dev/null); then
+        echo "⚠️  Failed to read existing settings, creating new file..."
+        echo "{}" > "$settings_file"
+        existing_settings="{}"
+    fi
+
+    # Validate JSON syntax
+    if ! echo "$existing_settings" | python3 -m json.tool >/dev/null 2>&1; then
+        echo "⚠️  Invalid JSON in settings.json, creating backup and recreating..."
+        cp "$settings_file" "$backup_file.invalid"
+        existing_settings="{}"
+    fi
+
+    # Create agent-manager hook configuration
+    local agent_manager_hook=$(cat << 'EOH'
 {
-  "on_session_start": [
+  "matchers": {
+    "sessionType": ["startup", "resume"]
+  },
+  "hooks": [
     {
-      "name": "agent-manager-check",
-      "command": "/agent:agent-manager",
-      "args": "check-and-update-agents",
-      "async": true,
-      "timeout": "60s"
-    }
-  ],
-  "on_session_end": [
-    {
-      "name": "agent-manager-cleanup", 
-      "command": "/agent:agent-manager",
-      "args": "cleanup-cache",
-      "async": true
+      "type": "command",
+      "command": "echo 'Checking for agent updates...' && /agent:agent-manager check-and-update-agents"
     }
   ]
 }
-EOF
+EOH
+)
+
+    # Use Python to merge JSON preserving existing settings
+    python3 << PYTHON_SCRIPT
+import json
+import sys
+
+try:
+    # Read existing settings
+    with open('$settings_file', 'r') as f:
+        settings = json.load(f)
+
+    # Ensure hooks section exists
+    if 'hooks' not in settings:
+        settings['hooks'] = {}
+
+    # Ensure SessionStart section exists
+    if 'SessionStart' not in settings['hooks']:
+        settings['hooks']['SessionStart'] = []
+
+    # Create agent-manager hook
+    agent_manager_hook = $agent_manager_hook
+
+    # Check if agent-manager hook already exists and remove it
+    settings['hooks']['SessionStart'] = [
+        hook for hook in settings['hooks']['SessionStart'] 
+        if not (isinstance(hook.get('hooks'), list) and 
+                any('agent-manager check-and-update-agents' in h.get('command', '') 
+                    for h in hook.get('hooks', [])))
+    ]
+
+    # Add the new agent-manager hook
+    settings['hooks']['SessionStart'].append(agent_manager_hook)
+
+    # Write updated settings
+    with open('$settings_file', 'w') as f:
+        json.dump(settings, f, indent=2)
+
+    print("✅ Successfully updated settings.json with agent-manager hooks")
+
+except Exception as e:
+    print(f"❌ Error updating settings.json: {e}")
+    sys.exit(1)
+PYTHON_SCRIPT
+
+    local python_exit_code=$?
+
+    if [ $python_exit_code -ne 0 ]; then
+        echo "❌ Failed to update settings.json with Python"
+
+        # Fallback: restore backup if it exists
+        if [ -f "$backup_file" ]; then
+            echo "🔄 Restoring backup..."
+            cp "$backup_file" "$settings_file"
+        fi
+
+        return 1
+    fi
+
+    # Validate the final JSON
+    if ! python3 -m json.tool "$settings_file" >/dev/null 2>&1; then
+        echo "❌ Generated invalid JSON, restoring backup..."
+        if [ -f "$backup_file" ]; then
+            cp "$backup_file" "$settings_file"
+        fi
+        return 1
+    fi
 
-    echo "✅ Startup hooks configured"
+    echo "✅ Startup hooks configured in $settings_file"
+    echo "💡 Backup created at: $backup_file"
+
+    # Show the hooks section for verification
+    echo "📋 Current SessionStart hooks:"
+    python3 -c "
+import json
+try:
+    with open('$settings_file', 'r') as f:
+        settings = json.load(f)
+    hooks = settings.get('hooks', {}).get('SessionStart', [])
+    if hooks:
+        for i, hook in enumerate(hooks):
+            print(f'  {i+1}. {hook}')
+    else:
+        print('  No SessionStart hooks found')
+except Exception as e:
+    print(f'  Error reading hooks: {e}')
+"
 }
 ```
 

.claude/settings.json

@@ -1,5 +1,8 @@
 {
   "permissions": {
+    "additionalDirectories": [
+      "/tmp"
+    ],
     "allow": [
       "Bash(awk:*)",
       "Bash(cat:*)",
@@ -86,5 +89,23 @@
       "WebFetch(domain:github.com)"
     ],
     "deny": []
+  },
+  "hooks": {
+    "SessionStart": [
+      {
+        "matchers": {
+          "sessionType": [
+            "startup",
+            "resume"
+          ]
+        },
+        "hooks": [
+          {
+            "type": "command",
+            "command": "echo 'Checking for agent updates...' && /agent:agent-manager check-and-update-agents"
+          }
+        ]
+      }
+    ]
   }
 }

.claude/settings.json.backup.1754053101

@@ -0,0 +1,91 @@
+{
+  "permissions": {
+    "additionalDirectories": ["/tmp"],
+    "allow": [
+      "Bash(awk:*)",
+      "Bash(cat:*)",
+      "Bash(chmod:*)",
+      "Bash(cp:*)",
+      "Bash(curl:*)",
+      "Bash(diff:*)",
+      "Bash(echo:*)",
+      "Bash(find:*)",
+      "Bash(gh api:*)",
+      "Bash(gh issue create:*)",
+      "Bash(gh issue edit:*)",
+      "Bash(gh issue list:*)",
+      "Bash(gh issue status:*)",
+      "Bash(gh issue view:*)",
+      "Bash(gh pr checkout:*)",
+      "Bash(gh pr checks:*)",
+      "Bash(gh pr close:*)",
+      "Bash(gh pr comment:*)",
+      "Bash(gh pr create:*)",
+      "Bash(gh pr diff:*)",
+      "Bash(gh pr edit:*)",
+      "Bash(gh pr list:*)",
+      "Bash(gh pr merge:*)",
+      "Bash(gh pr review:*)",
+      "Bash(gh pr view:*)",
+      "Bash(gh run list:*)",
+      "Bash(gh run view:*)",
+      "Bash(gh run watch:*)",
+      "Bash(gh workflow run:*)",
+      "Bash(git add:*)",
+      "Bash(git branch:*)",
+      "Bash(git checkout:*)",
+      "Bash(git cherry-pick:*)",
+      "Bash(git commit:*)",
+      "Bash(git config:*)",
+      "Bash(git diff:*)",
+      "Bash(git fetch:*)",
+      "Bash(git log:*)",
+      "Bash(git ls-tree:*)",
+      "Bash(git merge:*)",
+      "Bash(git mv:*)",
+      "Bash(git pull:*)",
+      "Bash(git push:*)",
+      "Bash(git rebase:*)",
+      "Bash(git remote remove:*)",
+      "Bash(git reset:*)",
+      "Bash(git restore:*)",
+      "Bash(git revert:*)",
+      "Bash(git rm:*)",
+      "Bash(git status:*)",
+      "Bash(grep:*)",
+      "Bash(head:*)",
+      "Bash(ls:*)",
+      "Bash(mkdir:*)",
+      "Bash(mv:*)",
+      "Bash(node:*)",
+      "Bash(npm:*)",
+      "Bash(npx:*)",
+      "Bash(patch:*)",
+      "Bash(pip install:*)",
+      "Bash(pip3 install:*)",
+      "Bash(pipenv:*)",
+      "Bash(poetry install:*)",
+      "Bash(poetry lock:*)",
+      "Bash(poetry run pytest:*)",
+      "Bash(poetry run python3:*)",
+      "Bash(poetry:*)",
+      "Bash(pytest:*)",
+      "Bash(python3:*)",
+      "Bash(python:*)",
+      "Bash(sed:*)",
+      "Bash(sort:*)",
+      "Bash(tail:*)",
+      "Bash(tar:*)",
+      "Bash(touch:*)",
+      "Bash(uniq:*)",
+      "Bash(unset:*)",
+      "Bash(unzip:*)",
+      "Bash(wget:*)",
+      "Bash(yarn:*)",
+      "Bash(zip:*)",
+      "WebFetch(domain:docs.anthropic.com)",
+      "WebFetch(domain:github.com)"
+    ],
+    "deny": []
+  }
+}

.github/Memory.md

@@ -1,5 +1,5 @@
 # AI Assistant Memory
-Last Updated: 2025-08-01T14:00:00Z
+Last Updated: 2025-08-01T20:30:00Z
 
 ## Current Goals
 - ✅ Improve test coverage for Blarify codebase to >80% (ACHIEVED 3x improvement: 20.76% → 63.76%)
@@ -43,7 +43,28 @@ Last Updated: 2025-08-01T14:00:00Z
 - [ ] Improve tests for concept_extractor.py (currently 53.33%)
 - [ ] Improve tests for documentation_graph_generator.py (currently 62.50%)
 
-## Recent Accomplishments 
+## Recent Accomplishments
+
+### Agent Manager Gadugi Sync Update (2025-08-01 20:30)
+- **Successfully updated agent-manager from gadugi repository** - Agent Manager PR #39 has been merged with significant improvements
+- **Enhanced agent-manager features** include:
+  - Improved startup hooks with robust JSON merging
+  - Better error handling and state persistence
+  - Enhanced Memory.md integration with atomic updates
+  - Comprehensive session integration system
+- **Updated all agents** from gadugi with latest versions and enhancements
+- **Registry metadata updated** to reflect latest sync timestamp (2025-08-01T20:30:00Z) 
+- **All workflow agents now at latest versions** ensuring optimal compatibility and features
+- **Agent ecosystem fully synchronized** with centralized gadugi repository
+
+### Agent Manager Gadugi Sync Completed (2025-08-01 16:30)
+- **Successfully synced all agents from gadugi repository** 
+- **Cloned gadugi repository** to `.claude/agent-manager/cache/repositories/gadugi/`
+- **Updated agent registry** with 8 agents from gadugi (workflow-master, orchestrator-agent, code-reviewer, code-review-response, prompt-writer, task-analyzer, worktree-manager, execution-monitor)
+- **Installed all gadugi agents** to local `.claude/agents/` directory
+- **Preserved local agent-manager** to maintain synchronization capabilities
+- **Agent ecosystem now complete** with all workflow, quality, and productivity agents available
+- **Registry tracks versions and sources** for proper dependency management
 
 ### Agent Manager PR #39 Code Review Response (2025-08-01 16:00)
 - **Processed positive review feedback** for comprehensive Agent Manager implementation

.gitignore

@@ -29,3 +29,7 @@ easy/
 # Important workflow checkpoints (committed for recovery)
 !.github/workflow-checkpoints/
 
+# Agent Manager cache
+.claude/agent-manager/cache/repositories/
+.claude/agent-manager/cache/downloaded/
+