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Hello Simon.
I faced a build error on JDK 10 ARM-64 environment. But this issue also happens on x86_64 environment.
Then I realized this repository does not have CI environment.
So, I prepared Travis CI environment for this repository.
Shall we start Travis CI for this repository?
It's useful to detect an issue for covered platforms.
See below results on JDK 8, 9, 10, and 11.
https://travis-ci.org/junaruga/FastQC/builds/494486515
The build is succeeded for JDK 8. But failed for JDK 9, 10, and 11.
You can just start your Travis CI on this repository enabling it from below page.
https://travis-ci.org/s-andrews/FastQC
Thank you.