9.1.0 release candidate

.github/workflows/build-main.yml

@@ -13,6 +13,10 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
+      - name: Install blosc
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y libblosc1
       - name: Set up Java
         uses: actions/setup-java@v3
         with:

.github/workflows/build-pr.yml

@@ -11,6 +11,10 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
+      - name: Install blosc
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y libblosc1
       - name: Set up Java
         uses: actions/setup-java@v3
         with:

pom.xml

@@ -5,13 +5,13 @@
 	<parent>
 		<groupId>org.scijava</groupId>
 		<artifactId>pom-scijava</artifactId>
-		<version>36.0.0</version>
+		<version>37.0.0</version>
 		<relativePath />
 	</parent>
 
 	<groupId>sc.fiji</groupId>
 	<artifactId>bigwarp_fiji</artifactId>
-	<version>9.0.1-SNAPSHOT</version>
+	<version>9.1.0-SNAPSHOT</version>
 
 	<name>BigWarp plugin for Fiji</name>
 	<description>A tool for manual pointwise deformable registration using bigdataviewer.</description>
@@ -128,16 +128,12 @@
 		<!-- NB: Deploy releases to the SciJava Maven repository. -->
 		<releaseProfiles>sign,deploy-to-scijava</releaseProfiles>
 
-		<n5.version>3.0.2</n5.version>
-		<n5-ij.version>3.2.6</n5-ij.version>
-		<n5-hdf5.version>2.0.1</n5-hdf5.version>
-		<n5-aws-s3.version>4.0.1</n5-aws-s3.version>
-		<n5-google-cloud.version>4.0.0</n5-google-cloud.version>
-		<n5-imglib2.version>7.0.0</n5-imglib2.version>
-		<n5-universe.version>1.2.0</n5-universe.version>
-		<n5-viewer_fiji.version>5.3.1</n5-viewer_fiji.version>
-		<n5-zarr.version>1.0.1</n5-zarr.version>
-		<bigdataviewer-core.version>10.4.8</bigdataviewer-core.version>
+		<n5.version>3.1.1</n5.version>
+		<n5-blosc.version>1.1.1</n5-blosc.version>
+		<n5-zarr.version>1.2.0</n5-zarr.version>
+		<n5-universe.version>1.3.1</n5-universe.version>
+		<n5-ij.version>4.0.0</n5-ij.version>
+		<n5-viewer_fiji.version>6.0.0</n5-viewer_fiji.version>
 
 	</properties>
 

src/main/java/bdv/gui/BigWarpViewerFrame.java

@@ -248,6 +248,8 @@ public void setTransformEnabled( final boolean enabled )
 	 * Get {@code Behaviours} hook where TransformEventHandler behaviours are installed.
 	 * This is installed in {@link #getTriggerBindings} with the id "transform".
 	 * The hook can be used to update the keymap and install additional behaviours.
+	 * 
+	 * @return the behaviours
 	 */
 	public Behaviours getTransformBehaviours()
 	{

src/main/java/bdv/gui/BigwarpLandmarkSelectionPanel.java

@@ -72,6 +72,18 @@ public class BigwarpLandmarkSelectionPanel<T> extends JPanel
 
 	/**
 	 * Displays a dialog showing point matches
+	 * 
+	 * @param data the data
+	 * @param sources list of sources
+	 * @param fieldOfViewOption option for inferring the field of view
+	 * @param outputIntervalList list of output intervals
+	 * @param matchedPtNames names of points for matching
+	 * @param interp interpolation
+	 * @param offsetIn the offset
+	 * @param resolution the resolution
+	 * @param isVirtual if true
+	 * @param nThreads number of threads
+	 * @param progressWriter progress writer
 	 */
 	public BigwarpLandmarkSelectionPanel( 
 			final BigWarpData<T> data,

src/main/java/bdv/gui/ExportDisplacementFieldFrame.java

@@ -48,6 +48,7 @@ public class ExportDisplacementFieldFrame extends JFrame
 
 	// formats
 	public static final String FMT_NGFF = "NGFF";
+	public static final String FMT_BIGWARP_TPS = "TPS";
 	public static final String FMT_SLICER = "Slicer";
 
 	// macro recording
@@ -412,8 +413,7 @@ public JPanel basicPanel()
 		ctxt.gridx = 3;
 		panel.add( new JLabel( "Format:" ), ctxt );
 		gbcCheck.gridx = 4;
-//		formatComboBox = new JComboBox< String >( new String[] { FMT_NGFF, FMT_SLICER } );
-		formatComboBox = new JComboBox< String >( new String[] { FMT_NGFF } );
+		formatComboBox = new JComboBox< String >( new String[] { FMT_NGFF, FMT_BIGWARP_TPS } );
 		panel.add( formatComboBox, gbcCheck );
 
 		ctxt.gridx = 5;

src/main/java/bdv/gui/ImprovedFormattedTextField.java

@@ -285,6 +285,9 @@ public AttributedCharacterIterator formatToCharacterIterator( Object obj )
 		public Object parseObject( String source, ParsePosition pos )
 		{
 			final int initialIndex = pos.getIndex();
+			if( fDelegate == null )
+				return source;
+
 			final Object result = fDelegate.parseObject( source, pos );
 			if ( result != null && pos.getIndex() < source.length() )
 			{