fixed bug in tl.export_to_anndata() and bumped version

sagar87 · Nov 25, 2024 · d008860 · d008860
1 parent 7d56fc8
commit d008860
Show file tree

Hide file tree

Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/README.md b/README.md
@@ -25,4 +25,4 @@ pip install spatialproteomics
 
 Check the documentation for further information https://sagar87.github.io/spatialproteomics/.
 
-For a more interactive learning experience, you can also check out [this workshop](https://github.com/MeyerBender/spatialproteomics_workshop) on spatialproteomics (based on `v0.5.7`, some syntax details might have changed since).
+For a more interactive learning experience, you can also check out [this workshop](https://github.com/MeyerBender/spatialproteomics_workshop).
diff --git a/docs/conf.py b/docs/conf.py
@@ -12,7 +12,7 @@
 author = "Matthias Meyer-Bender, Harald Vohringer"
 
 # Dynamically set the release version for multi-version builds
-release = os.getenv("SPHINX_MULTIVERSION_NAME", "0.6.6")
+release = os.getenv("SPHINX_MULTIVERSION_NAME", "0.6.7")
 
 # -- General configuration ---------------------------------------------------
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -3,7 +3,7 @@ name = "spatialproteomics"
 packages = [
     { include = "spatialproteomics" },
 ]
-version = "0.6.6"
+version = "0.6.7"
 description = "spatialproteomics provides tools for the analysis of highly multiplexed immunofluorescence data"
 readme = "README.md"
 authors = ["Matthias Meyer-Bender", "Harald Vohringer"]

diff --git a/spatialproteomics/tl/tool.py b/spatialproteomics/tl/tool.py
@@ -401,8 +401,8 @@ def convert_to_anndata(
             adata.obs = self._obj.pp.get_layer_as_df(obs_key, idx_to_str=True)
 
             # if we have labels and colors for them, we add them to the anndata object
-            if Dims.LABELS in self._obj.dims and Layers.PROPERTIES in self._obj:
-                properties = self._obj.pp.get_layer_as_df(Layers.PROPERTIES)
+            if Dims.LABELS in self._obj.dims and Layers.LA_PROPERTIES in self._obj:
+                properties = self._obj.pp.get_layer_as_df(Layers.LA_PROPERTIES)
                 if Props.COLOR in properties.columns:
                     # putting it into the anndata object
                     adata.uns[f"{Features.LABELS}_colors"] = list(properties[Props.COLOR].values)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -25,4 +25,4 @@ pip install spatialproteomics

		Check the documentation for further information https://sagar87.github.io/spatialproteomics/.

		For a more interactive learning experience, you can also check out [this workshop](https://github.com/MeyerBender/spatialproteomics_workshop) on spatialproteomics (based on `v0.5.7`, some syntax details might have changed since).
		For a more interactive learning experience, you can also check out [this workshop](https://github.com/MeyerBender/spatialproteomics_workshop).